Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfiE and srmB are separated by 32 nucleotides srmB and trmN are separated by 131 nucleotides trmN and nadB overlap by 16 nucleotides
BNILDI_11830: yfiE - Uncharacterized HTH-type transcriptional regulator YfiE, at 2,370,554 to 2,371,435
yfiE
BNILDI_11835: srmB - ATP-dependent RNA helicase SrmB, at 2,371,468 to 2,372,802
srmB
BNILDI_11840: trmN - tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN, at 2,372,934 to 2,373,671
trmN
BNILDI_11845: nadB - L-aspartate oxidase, at 2,373,656 to 2,375,278
nadB
Position (kb)
2371
2372
2373 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2370.572 kb on - strand at 2370.580 kb on + strand at 2370.580 kb on + strand at 2370.580 kb on + strand at 2370.580 kb on + strand at 2370.634 kb on + strand at 2370.635 kb on - strand at 2370.758 kb on + strand, within yfiE at 2370.782 kb on - strand, within yfiE at 2370.829 kb on - strand, within yfiE at 2371.102 kb on + strand, within yfiE at 2371.103 kb on - strand, within yfiE at 2371.111 kb on + strand, within yfiE at 2371.117 kb on + strand, within yfiE at 2371.121 kb on - strand, within yfiE at 2371.207 kb on + strand, within yfiE at 2371.207 kb on + strand, within yfiE at 2371.209 kb on + strand, within yfiE at 2371.213 kb on + strand, within yfiE at 2371.260 kb on - strand, within yfiE at 2371.399 kb on + strand at 2371.705 kb on - strand, within srmB at 2371.706 kb on + strand, within srmB at 2371.812 kb on + strand, within srmB at 2371.840 kb on - strand, within srmB at 2371.900 kb on + strand, within srmB at 2371.955 kb on - strand, within srmB at 2371.973 kb on + strand, within srmB at 2371.974 kb on - strand, within srmB at 2372.074 kb on + strand, within srmB at 2372.074 kb on + strand, within srmB at 2372.283 kb on + strand, within srmB at 2372.283 kb on + strand, within srmB at 2372.283 kb on + strand, within srmB at 2372.284 kb on - strand, within srmB at 2372.319 kb on + strand, within srmB at 2372.380 kb on + strand, within srmB at 2372.385 kb on - strand, within srmB at 2372.385 kb on - strand, within srmB at 2372.456 kb on + strand, within srmB at 2372.456 kb on + strand, within srmB at 2372.456 kb on + strand, within srmB at 2372.496 kb on + strand, within srmB at 2372.671 kb on + strand at 2372.807 kb on + strand at 2372.808 kb on - strand at 2372.831 kb on + strand at 2372.832 kb on - strand at 2372.832 kb on - strand at 2372.864 kb on - strand at 2372.945 kb on + strand at 2372.945 kb on + strand at 2373.112 kb on + strand, within trmN at 2373.145 kb on + strand, within trmN at 2373.146 kb on - strand, within trmN at 2373.306 kb on + strand, within trmN at 2373.306 kb on + strand, within trmN at 2373.306 kb on + strand, within trmN at 2373.307 kb on - strand, within trmN at 2373.307 kb on - strand, within trmN at 2373.310 kb on - strand, within trmN at 2373.366 kb on - strand, within trmN at 2373.366 kb on - strand, within trmN at 2373.366 kb on - strand, within trmN at 2373.434 kb on - strand, within trmN at 2373.496 kb on + strand, within trmN at 2373.497 kb on - strand, within trmN at 2373.497 kb on - strand, within trmN at 2373.596 kb on - strand, within trmN at 2373.634 kb on - strand at 2373.634 kb on - strand at 2373.634 kb on - strand at 2373.634 kb on - strand at 2373.657 kb on + strand at 2373.666 kb on - strand at 2373.670 kb on - strand at 2373.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,370,572 - +0.1 2,370,580 + -1.5 2,370,580 + +0.0 2,370,580 + +0.6 2,370,580 + +0.0 2,370,634 + -0.5 2,370,635 - -0.1 2,370,758 + yfiE BNILDI_11830 0.23 +0.8 2,370,782 - yfiE BNILDI_11830 0.26 +0.5 2,370,829 - yfiE BNILDI_11830 0.31 +0.2 2,371,102 + yfiE BNILDI_11830 0.62 +1.7 2,371,103 - yfiE BNILDI_11830 0.62 -0.0 2,371,111 + yfiE BNILDI_11830 0.63 +0.5 2,371,117 + yfiE BNILDI_11830 0.64 -0.1 2,371,121 - yfiE BNILDI_11830 0.64 -0.0 2,371,207 + yfiE BNILDI_11830 0.74 +0.2 2,371,207 + yfiE BNILDI_11830 0.74 -0.4 2,371,209 + yfiE BNILDI_11830 0.74 +1.3 2,371,213 + yfiE BNILDI_11830 0.75 +0.6 2,371,260 - yfiE BNILDI_11830 0.80 +0.7 2,371,399 + -0.8 2,371,705 - srmB BNILDI_11835 0.18 -0.2 2,371,706 + srmB BNILDI_11835 0.18 -2.4 2,371,812 + srmB BNILDI_11835 0.26 +0.4 2,371,840 - srmB BNILDI_11835 0.28 -1.2 2,371,900 + srmB BNILDI_11835 0.32 +0.1 2,371,955 - srmB BNILDI_11835 0.36 -0.8 2,371,973 + srmB BNILDI_11835 0.38 -1.1 2,371,974 - srmB BNILDI_11835 0.38 -2.7 2,372,074 + srmB BNILDI_11835 0.45 +0.9 2,372,074 + srmB BNILDI_11835 0.45 -0.6 2,372,283 + srmB BNILDI_11835 0.61 -1.5 2,372,283 + srmB BNILDI_11835 0.61 -2.4 2,372,283 + srmB BNILDI_11835 0.61 -2.4 2,372,284 - srmB BNILDI_11835 0.61 -0.7 2,372,319 + srmB BNILDI_11835 0.64 -1.1 2,372,380 + srmB BNILDI_11835 0.68 -3.0 2,372,385 - srmB BNILDI_11835 0.69 -1.6 2,372,385 - srmB BNILDI_11835 0.69 -2.8 2,372,456 + srmB BNILDI_11835 0.74 -2.3 2,372,456 + srmB BNILDI_11835 0.74 +0.9 2,372,456 + srmB BNILDI_11835 0.74 +0.6 2,372,496 + srmB BNILDI_11835 0.77 -1.4 2,372,671 + +0.1 2,372,807 + +1.5 2,372,808 - -0.3 2,372,831 + -0.1 2,372,832 - -0.1 2,372,832 - +0.1 2,372,864 - -0.2 2,372,945 + +0.8 2,372,945 + +0.2 2,373,112 + trmN BNILDI_11840 0.24 +0.3 2,373,145 + trmN BNILDI_11840 0.29 +0.4 2,373,146 - trmN BNILDI_11840 0.29 +1.2 2,373,306 + trmN BNILDI_11840 0.50 -0.0 2,373,306 + trmN BNILDI_11840 0.50 +1.9 2,373,306 + trmN BNILDI_11840 0.50 -4.2 2,373,307 - trmN BNILDI_11840 0.51 +1.1 2,373,307 - trmN BNILDI_11840 0.51 +0.1 2,373,310 - trmN BNILDI_11840 0.51 +0.6 2,373,366 - trmN BNILDI_11840 0.59 -0.3 2,373,366 - trmN BNILDI_11840 0.59 +0.8 2,373,366 - trmN BNILDI_11840 0.59 +0.6 2,373,434 - trmN BNILDI_11840 0.68 -0.0 2,373,496 + trmN BNILDI_11840 0.76 -0.0 2,373,497 - trmN BNILDI_11840 0.76 +0.3 2,373,497 - trmN BNILDI_11840 0.76 -0.2 2,373,596 - trmN BNILDI_11840 0.90 +0.6 2,373,634 - -0.6 2,373,634 - +0.4 2,373,634 - +0.3 2,373,634 - +0.2 2,373,657 + -1.5 2,373,666 - -0.2 2,373,670 - +0.7 2,373,670 - -0.4
Or see this region's nucleotide sequence