Strain Fitness in Escherichia coli ECRC62 around BNILDI_11835

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfiE and srmB are separated by 32 nucleotidessrmB and trmN are separated by 131 nucleotidestrmN and nadB overlap by 16 nucleotides BNILDI_11830: yfiE - Uncharacterized HTH-type transcriptional regulator YfiE, at 2,370,554 to 2,371,435 yfiE BNILDI_11835: srmB - ATP-dependent RNA helicase SrmB, at 2,371,468 to 2,372,802 srmB BNILDI_11840: trmN - tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN, at 2,372,934 to 2,373,671 trmN BNILDI_11845: nadB - L-aspartate oxidase, at 2,373,656 to 2,375,278 nadB Position (kb) 2371 2372 2373Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2370.572 kb on - strandat 2370.580 kb on + strandat 2370.580 kb on + strandat 2370.580 kb on + strandat 2370.580 kb on + strandat 2370.634 kb on + strandat 2370.635 kb on - strandat 2370.758 kb on + strand, within yfiEat 2370.782 kb on - strand, within yfiEat 2370.829 kb on - strand, within yfiEat 2371.102 kb on + strand, within yfiEat 2371.103 kb on - strand, within yfiEat 2371.111 kb on + strand, within yfiEat 2371.117 kb on + strand, within yfiEat 2371.121 kb on - strand, within yfiEat 2371.207 kb on + strand, within yfiEat 2371.207 kb on + strand, within yfiEat 2371.209 kb on + strand, within yfiEat 2371.213 kb on + strand, within yfiEat 2371.260 kb on - strand, within yfiEat 2371.399 kb on + strandat 2371.705 kb on - strand, within srmBat 2371.706 kb on + strand, within srmBat 2371.812 kb on + strand, within srmBat 2371.840 kb on - strand, within srmBat 2371.900 kb on + strand, within srmBat 2371.955 kb on - strand, within srmBat 2371.973 kb on + strand, within srmBat 2371.974 kb on - strand, within srmBat 2372.074 kb on + strand, within srmBat 2372.074 kb on + strand, within srmBat 2372.283 kb on + strand, within srmBat 2372.283 kb on + strand, within srmBat 2372.283 kb on + strand, within srmBat 2372.284 kb on - strand, within srmBat 2372.319 kb on + strand, within srmBat 2372.380 kb on + strand, within srmBat 2372.385 kb on - strand, within srmBat 2372.385 kb on - strand, within srmBat 2372.456 kb on + strand, within srmBat 2372.456 kb on + strand, within srmBat 2372.456 kb on + strand, within srmBat 2372.496 kb on + strand, within srmBat 2372.671 kb on + strandat 2372.807 kb on + strandat 2372.808 kb on - strandat 2372.831 kb on + strandat 2372.832 kb on - strandat 2372.832 kb on - strandat 2372.864 kb on - strandat 2372.945 kb on + strandat 2372.945 kb on + strandat 2373.112 kb on + strand, within trmNat 2373.145 kb on + strand, within trmNat 2373.146 kb on - strand, within trmNat 2373.306 kb on + strand, within trmNat 2373.306 kb on + strand, within trmNat 2373.306 kb on + strand, within trmNat 2373.307 kb on - strand, within trmNat 2373.307 kb on - strand, within trmNat 2373.310 kb on - strand, within trmNat 2373.366 kb on - strand, within trmNat 2373.366 kb on - strand, within trmNat 2373.366 kb on - strand, within trmNat 2373.434 kb on - strand, within trmNat 2373.496 kb on + strand, within trmNat 2373.497 kb on - strand, within trmNat 2373.497 kb on - strand, within trmNat 2373.596 kb on - strand, within trmNat 2373.634 kb on - strandat 2373.634 kb on - strandat 2373.634 kb on - strandat 2373.634 kb on - strandat 2373.657 kb on + strandat 2373.666 kb on - strandat 2373.670 kb on - strandat 2373.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,370,572 - +0.1
2,370,580 + -1.5
2,370,580 + +0.0
2,370,580 + +0.6
2,370,580 + +0.0
2,370,634 + -0.5
2,370,635 - -0.1
2,370,758 + yfiE BNILDI_11830 0.23 +0.8
2,370,782 - yfiE BNILDI_11830 0.26 +0.5
2,370,829 - yfiE BNILDI_11830 0.31 +0.2
2,371,102 + yfiE BNILDI_11830 0.62 +1.7
2,371,103 - yfiE BNILDI_11830 0.62 -0.0
2,371,111 + yfiE BNILDI_11830 0.63 +0.5
2,371,117 + yfiE BNILDI_11830 0.64 -0.1
2,371,121 - yfiE BNILDI_11830 0.64 -0.0
2,371,207 + yfiE BNILDI_11830 0.74 +0.2
2,371,207 + yfiE BNILDI_11830 0.74 -0.4
2,371,209 + yfiE BNILDI_11830 0.74 +1.3
2,371,213 + yfiE BNILDI_11830 0.75 +0.6
2,371,260 - yfiE BNILDI_11830 0.80 +0.7
2,371,399 + -0.8
2,371,705 - srmB BNILDI_11835 0.18 -0.2
2,371,706 + srmB BNILDI_11835 0.18 -2.4
2,371,812 + srmB BNILDI_11835 0.26 +0.4
2,371,840 - srmB BNILDI_11835 0.28 -1.2
2,371,900 + srmB BNILDI_11835 0.32 +0.1
2,371,955 - srmB BNILDI_11835 0.36 -0.8
2,371,973 + srmB BNILDI_11835 0.38 -1.1
2,371,974 - srmB BNILDI_11835 0.38 -2.7
2,372,074 + srmB BNILDI_11835 0.45 +0.9
2,372,074 + srmB BNILDI_11835 0.45 -0.6
2,372,283 + srmB BNILDI_11835 0.61 -1.5
2,372,283 + srmB BNILDI_11835 0.61 -2.4
2,372,283 + srmB BNILDI_11835 0.61 -2.4
2,372,284 - srmB BNILDI_11835 0.61 -0.7
2,372,319 + srmB BNILDI_11835 0.64 -1.1
2,372,380 + srmB BNILDI_11835 0.68 -3.0
2,372,385 - srmB BNILDI_11835 0.69 -1.6
2,372,385 - srmB BNILDI_11835 0.69 -2.8
2,372,456 + srmB BNILDI_11835 0.74 -2.3
2,372,456 + srmB BNILDI_11835 0.74 +0.9
2,372,456 + srmB BNILDI_11835 0.74 +0.6
2,372,496 + srmB BNILDI_11835 0.77 -1.4
2,372,671 + +0.1
2,372,807 + +1.5
2,372,808 - -0.3
2,372,831 + -0.1
2,372,832 - -0.1
2,372,832 - +0.1
2,372,864 - -0.2
2,372,945 + +0.8
2,372,945 + +0.2
2,373,112 + trmN BNILDI_11840 0.24 +0.3
2,373,145 + trmN BNILDI_11840 0.29 +0.4
2,373,146 - trmN BNILDI_11840 0.29 +1.2
2,373,306 + trmN BNILDI_11840 0.50 -0.0
2,373,306 + trmN BNILDI_11840 0.50 +1.9
2,373,306 + trmN BNILDI_11840 0.50 -4.2
2,373,307 - trmN BNILDI_11840 0.51 +1.1
2,373,307 - trmN BNILDI_11840 0.51 +0.1
2,373,310 - trmN BNILDI_11840 0.51 +0.6
2,373,366 - trmN BNILDI_11840 0.59 -0.3
2,373,366 - trmN BNILDI_11840 0.59 +0.8
2,373,366 - trmN BNILDI_11840 0.59 +0.6
2,373,434 - trmN BNILDI_11840 0.68 -0.0
2,373,496 + trmN BNILDI_11840 0.76 -0.0
2,373,497 - trmN BNILDI_11840 0.76 +0.3
2,373,497 - trmN BNILDI_11840 0.76 -0.2
2,373,596 - trmN BNILDI_11840 0.90 +0.6
2,373,634 - -0.6
2,373,634 - +0.4
2,373,634 - +0.3
2,373,634 - +0.2
2,373,657 + -1.5
2,373,666 - -0.2
2,373,670 - +0.7
2,373,670 - -0.4

Or see this region's nucleotide sequence