Strain Fitness in Escherichia coli ECRC62 around BNILDI_10810

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
2,186,851	+				-1.9
2,186,869	+				+0.7
2,186,878	+				-0.8
2,186,878	+				+0.0
2,186,948	+				-0.2
2,186,948	+				-1.1
2,186,987	+				-1.0
2,187,030	+	cysD	BNILDI_10805	0.11	-2.1
2,187,031	-	cysD	BNILDI_10805	0.11	-2.8
2,187,148	-	cysD	BNILDI_10805	0.24	-1.7
2,187,201	-	cysD	BNILDI_10805	0.30	-2.7
2,187,266	+	cysD	BNILDI_10805	0.37	-2.1
2,187,270	-	cysD	BNILDI_10805	0.37	-1.8
2,187,270	-	cysD	BNILDI_10805	0.37	-2.1
2,187,303	-	cysD	BNILDI_10805	0.41	-2.4
2,187,307	-	cysD	BNILDI_10805	0.41	-1.0
2,187,441	+	cysD	BNILDI_10805	0.56	-2.3
2,187,442	-	cysD	BNILDI_10805	0.56	-1.8
2,187,442	-	cysD	BNILDI_10805	0.56	-0.0
2,187,442	-	cysD	BNILDI_10805	0.56	-3.3
2,187,491	+	cysD	BNILDI_10805	0.62	-0.8
2,187,492	-	cysD	BNILDI_10805	0.62	-1.6
2,187,519	+	cysD	BNILDI_10805	0.65	-1.4
2,187,519	+	cysD	BNILDI_10805	0.65	-1.5
2,187,593	+	cysD	BNILDI_10805	0.73	-2.1
2,187,593	+	cysD	BNILDI_10805	0.73	-1.1
2,187,594	-	cysD	BNILDI_10805	0.73	-2.0
2,187,831	+				-1.2
2,187,912	+				-2.1
2,187,912	+				-1.2
2,187,912	+				-2.4
2,187,913	-				-1.7
2,188,122	+	cysN	BNILDI_10810	0.20	-2.0
2,188,199	-	cysN	BNILDI_10810	0.25	-1.9
2,188,199	-	cysN	BNILDI_10810	0.25	-1.9
2,188,210	-	cysN	BNILDI_10810	0.26	-1.0
2,188,335	-	cysN	BNILDI_10810	0.35	-2.2
2,188,421	+	cysN	BNILDI_10810	0.41	-1.2
2,188,422	-	cysN	BNILDI_10810	0.41	-2.3
2,188,497	+	cysN	BNILDI_10810	0.46	-0.7
2,188,497	+	cysN	BNILDI_10810	0.46	-2.8
2,188,498	-	cysN	BNILDI_10810	0.46	-2.6
2,188,595	-	cysN	BNILDI_10810	0.53	-2.6
2,188,595	-	cysN	BNILDI_10810	0.53	-1.1
2,188,595	-	cysN	BNILDI_10810	0.53	-1.8
2,188,903	+	cysN	BNILDI_10810	0.74	-2.5
2,189,058	-	cysN	BNILDI_10810	0.85	-1.9
2,189,058	-	cysN	BNILDI_10810	0.85	-1.2
2,189,263	-				-1.9
2,189,267	-				-2.0
2,189,267	-				-3.6
2,189,333	-	cysC	BNILDI_10815	0.11	-2.6
2,189,333	-	cysC	BNILDI_10815	0.11	-0.6
2,189,353	+	cysC	BNILDI_10815	0.14	-2.9
2,189,353	+	cysC	BNILDI_10815	0.14	-0.6
2,189,388	-	cysC	BNILDI_10815	0.20	-3.8
2,189,422	+	cysC	BNILDI_10815	0.25	-2.6
2,189,427	-	cysC	BNILDI_10815	0.26	-2.2
2,189,441	+	cysC	BNILDI_10815	0.29	-3.3
2,189,441	+	cysC	BNILDI_10815	0.29	-4.4
2,189,442	-	cysC	BNILDI_10815	0.29	-2.2
2,189,445	+	cysC	BNILDI_10815	0.29	-1.1
2,189,445	+	cysC	BNILDI_10815	0.29	-4.5
2,189,446	-	cysC	BNILDI_10815	0.29	-0.6
2,189,446	-	cysC	BNILDI_10815	0.29	-2.4
2,189,446	-	cysC	BNILDI_10815	0.29	-2.0
2,189,513	+	cysC	BNILDI_10815	0.40	-2.1
2,189,588	+	cysC	BNILDI_10815	0.53	-3.9
2,189,588	+	cysC	BNILDI_10815	0.53	-2.8
2,189,649	-	cysC	BNILDI_10815	0.63	-2.0
2,189,708	-	cysC	BNILDI_10815	0.73	-2.7
2,189,708	-	cysC	BNILDI_10815	0.73	-4.6
2,189,710	-	cysC	BNILDI_10815	0.73	-4.5
2,189,711	+	cysC	BNILDI_10815	0.73	-1.9
2,189,711	+	cysC	BNILDI_10815	0.73	-1.4
2,189,711	+	cysC	BNILDI_10815	0.73	-2.7
2,189,712	-	cysC	BNILDI_10815	0.73	-1.6
2,189,834	-				-4.5
2,189,834	-				-2.6
2,189,861	+				-1.7
2,189,861	+				-2.2
2,190,018	+	ygbE	BNILDI_10820	0.29	-0.5
2,190,018	+	ygbE	BNILDI_10820	0.29	+0.9
2,190,018	+	ygbE	BNILDI_10820	0.29	+1.0
2,190,058	+	ygbE	BNILDI_10820	0.42	+0.1
2,190,059	-	ygbE	BNILDI_10820	0.42	-1.1
2,190,084	+	ygbE	BNILDI_10820	0.50	+0.5
2,190,084	+	ygbE	BNILDI_10820	0.50	-0.0
2,190,085	-	ygbE	BNILDI_10820	0.50	+0.2
2,190,088	+	ygbE	BNILDI_10820	0.51	-0.3
2,190,088	+	ygbE	BNILDI_10820	0.51	+0.8
2,190,170	+	ygbE	BNILDI_10820	0.76	+5.3
2,190,171	-	ygbE	BNILDI_10820	0.77	-1.2
2,190,171	-	ygbE	BNILDI_10820	0.77	-0.9
2,190,175	+	ygbE	BNILDI_10820	0.78	-0.2
2,190,176	-	ygbE	BNILDI_10820	0.78	-0.3
2,190,203	+	ygbE	BNILDI_10820	0.86	-0.8
2,190,210	+	ygbE	BNILDI_10820	0.89	+0.1
2,190,228	+				+0.2
2,190,229	-				-1.3
2,190,244	+				-0.1
2,190,251	+				+0.0