Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rdgB and yggU are separated by 7 nucleotides yggU and yggT overlap by 4 nucleotides yggT and yggS are separated by 17 nucleotides yggS and yggR are separated by 17 nucleotides
BNILDI_09690: rdgB - XTP/dITP diphosphatase, at 1,950,335 to 1,950,928
rdgB
BNILDI_09695: yggU - DUF167 domain-containing protein, at 1,950,936 to 1,951,226
yggU
BNILDI_09700: yggT - osmotic shock tolerance protein YggT, at 1,951,223 to 1,951,789
yggT
BNILDI_09705: yggS - pyridoxal phosphate homeostasis protein, at 1,951,807 to 1,952,511
yggS
BNILDI_09710: yggR - Uncharacterized protein YggR, at 1,952,529 to 1,953,509
yggR
Position (kb) 1951
1952
1953 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1950.933 kb on + strand at 1950.938 kb on - strand at 1950.938 kb on - strand at 1950.938 kb on - strand at 1950.938 kb on - strand at 1950.942 kb on - strand at 1951.124 kb on + strand, within yggU at 1951.125 kb on - strand, within yggU at 1951.140 kb on + strand, within yggU at 1951.180 kb on + strand, within yggU at 1951.180 kb on + strand, within yggU at 1951.180 kb on + strand, within yggU at 1951.208 kb on + strand at 1951.208 kb on + strand at 1951.208 kb on + strand at 1951.226 kb on + strand at 1951.271 kb on + strand at 1951.272 kb on - strand at 1951.275 kb on - strand at 1951.303 kb on - strand, within yggT at 1951.303 kb on - strand, within yggT at 1951.408 kb on - strand, within yggT at 1951.568 kb on - strand, within yggT at 1951.581 kb on + strand, within yggT at 1951.746 kb on + strand at 1951.746 kb on + strand at 1951.747 kb on - strand at 1951.783 kb on + strand at 1951.890 kb on + strand, within yggS at 1951.990 kb on + strand, within yggS at 1951.994 kb on + strand, within yggS at 1952.038 kb on + strand, within yggS at 1952.119 kb on - strand, within yggS at 1952.247 kb on + strand, within yggS at 1952.248 kb on - strand, within yggS at 1952.268 kb on + strand, within yggS at 1952.320 kb on - strand, within yggS at 1952.324 kb on - strand, within yggS at 1952.424 kb on + strand, within yggS at 1952.525 kb on + strand at 1952.534 kb on + strand at 1952.581 kb on + strand at 1952.581 kb on + strand at 1952.704 kb on + strand, within yggR at 1952.704 kb on + strand, within yggR at 1952.815 kb on + strand, within yggR at 1952.981 kb on + strand, within yggR at 1952.981 kb on + strand, within yggR at 1953.009 kb on + strand, within yggR at 1953.009 kb on + strand, within yggR at 1953.010 kb on - strand, within yggR at 1953.010 kb on - strand, within yggR at 1953.011 kb on + strand, within yggR at 1953.011 kb on + strand, within yggR at 1953.012 kb on - strand, within yggR at 1953.012 kb on - strand, within yggR at 1953.015 kb on + strand, within yggR at 1953.015 kb on + strand, within yggR at 1953.015 kb on + strand, within yggR at 1953.016 kb on - strand, within yggR at 1953.065 kb on + strand, within yggR at 1953.065 kb on + strand, within yggR at 1953.066 kb on - strand, within yggR at 1953.202 kb on + strand, within yggR at 1953.202 kb on + strand, within yggR at 1953.202 kb on + strand, within yggR at 1953.202 kb on + strand, within yggR at 1953.203 kb on - strand, within yggR at 1953.203 kb on - strand, within yggR at 1953.203 kb on - strand, within yggR at 1953.206 kb on + strand, within yggR at 1953.206 kb on + strand, within yggR at 1953.275 kb on - strand, within yggR at 1953.278 kb on + strand, within yggR at 1953.279 kb on - strand, within yggR at 1953.279 kb on - strand, within yggR at 1953.279 kb on - strand, within yggR at 1953.298 kb on + strand, within yggR at 1953.364 kb on + strand, within yggR at 1953.365 kb on - strand, within yggR at 1953.422 kb on - strand at 1953.477 kb on + strand at 1953.478 kb on - strand at 1953.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,950,933 + -0.6 1,950,938 - -0.6 1,950,938 - -0.5 1,950,938 - -0.1 1,950,938 - -1.3 1,950,942 - +1.7 1,951,124 + yggU BNILDI_09695 0.65 -0.1 1,951,125 - yggU BNILDI_09695 0.65 +1.5 1,951,140 + yggU BNILDI_09695 0.70 +0.5 1,951,180 + yggU BNILDI_09695 0.84 +1.1 1,951,180 + yggU BNILDI_09695 0.84 +0.5 1,951,180 + yggU BNILDI_09695 0.84 +0.3 1,951,208 + +0.0 1,951,208 + -0.3 1,951,208 + -0.8 1,951,226 + -0.2 1,951,271 + +0.1 1,951,272 - -1.1 1,951,275 - -0.2 1,951,303 - yggT BNILDI_09700 0.14 +0.8 1,951,303 - yggT BNILDI_09700 0.14 +0.1 1,951,408 - yggT BNILDI_09700 0.33 +1.7 1,951,568 - yggT BNILDI_09700 0.61 +0.2 1,951,581 + yggT BNILDI_09700 0.63 -1.2 1,951,746 + +1.5 1,951,746 + +0.1 1,951,747 - +0.3 1,951,783 + +0.2 1,951,890 + yggS BNILDI_09705 0.12 +1.4 1,951,990 + yggS BNILDI_09705 0.26 +0.5 1,951,994 + yggS BNILDI_09705 0.27 -0.9 1,952,038 + yggS BNILDI_09705 0.33 +1.6 1,952,119 - yggS BNILDI_09705 0.44 -0.4 1,952,247 + yggS BNILDI_09705 0.62 +1.1 1,952,248 - yggS BNILDI_09705 0.63 -0.4 1,952,268 + yggS BNILDI_09705 0.65 -0.6 1,952,320 - yggS BNILDI_09705 0.73 -1.4 1,952,324 - yggS BNILDI_09705 0.73 +0.4 1,952,424 + yggS BNILDI_09705 0.88 -0.3 1,952,525 + +1.1 1,952,534 + -0.7 1,952,581 + +0.4 1,952,581 + +0.9 1,952,704 + yggR BNILDI_09710 0.18 -0.2 1,952,704 + yggR BNILDI_09710 0.18 +0.9 1,952,815 + yggR BNILDI_09710 0.29 +0.1 1,952,981 + yggR BNILDI_09710 0.46 -1.2 1,952,981 + yggR BNILDI_09710 0.46 +0.3 1,953,009 + yggR BNILDI_09710 0.49 -0.5 1,953,009 + yggR BNILDI_09710 0.49 -0.5 1,953,010 - yggR BNILDI_09710 0.49 -0.3 1,953,010 - yggR BNILDI_09710 0.49 -0.9 1,953,011 + yggR BNILDI_09710 0.49 +2.8 1,953,011 + yggR BNILDI_09710 0.49 +0.0 1,953,012 - yggR BNILDI_09710 0.49 -0.0 1,953,012 - yggR BNILDI_09710 0.49 +0.1 1,953,015 + yggR BNILDI_09710 0.50 -0.3 1,953,015 + yggR BNILDI_09710 0.50 +0.1 1,953,015 + yggR BNILDI_09710 0.50 -0.4 1,953,016 - yggR BNILDI_09710 0.50 -0.3 1,953,065 + yggR BNILDI_09710 0.55 +0.9 1,953,065 + yggR BNILDI_09710 0.55 -0.3 1,953,066 - yggR BNILDI_09710 0.55 +0.6 1,953,202 + yggR BNILDI_09710 0.69 +0.7 1,953,202 + yggR BNILDI_09710 0.69 +0.5 1,953,202 + yggR BNILDI_09710 0.69 +0.4 1,953,202 + yggR BNILDI_09710 0.69 -4.0 1,953,203 - yggR BNILDI_09710 0.69 +0.8 1,953,203 - yggR BNILDI_09710 0.69 -1.5 1,953,203 - yggR BNILDI_09710 0.69 -0.2 1,953,206 + yggR BNILDI_09710 0.69 -0.3 1,953,206 + yggR BNILDI_09710 0.69 -0.5 1,953,275 - yggR BNILDI_09710 0.76 -0.4 1,953,278 + yggR BNILDI_09710 0.76 -0.3 1,953,279 - yggR BNILDI_09710 0.76 -0.0 1,953,279 - yggR BNILDI_09710 0.76 -0.2 1,953,279 - yggR BNILDI_09710 0.76 +0.5 1,953,298 + yggR BNILDI_09710 0.78 -0.0 1,953,364 + yggR BNILDI_09710 0.85 +0.3 1,953,365 - yggR BNILDI_09710 0.85 -0.7 1,953,422 - +1.5 1,953,477 + +1.7 1,953,478 - +0.1 1,953,478 - -0.1
Or see this region's nucleotide sequence