Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_09585 and BNILDI_09590 are separated by 304 nucleotides BNILDI_09590 and tnp-IS1 are separated by 44 nucleotides tnp-IS1 and BNILDI_09600 are separated by 28 nucleotides
BNILDI_09585: BNILDI_09585 - hypothetical protein, at 1,931,959 to 1,933,182
_09585
BNILDI_09590: BNILDI_09590 - IS1 family transposase, at 1,933,487 to 1,933,864
_09590
BNILDI_09595: tnp-IS1 - IS1 family transposase, at 1,933,909 to 1,934,184
tnp-IS1
BNILDI_09600: BNILDI_09600 - ShiA-like protein, at 1,934,213 to 1,935,280
_09600
Position (kb)
1933
1934 Strain fitness (log2 ratio)
-2
-1
0
1 at 1932.510 kb on + strand, within BNILDI_09585 at 1932.511 kb on - strand, within BNILDI_09585 at 1932.551 kb on + strand, within BNILDI_09585 at 1932.767 kb on + strand, within BNILDI_09585 at 1932.775 kb on + strand, within BNILDI_09585 at 1932.822 kb on + strand, within BNILDI_09585 at 1932.823 kb on - strand, within BNILDI_09585 at 1932.884 kb on + strand, within BNILDI_09585 at 1932.924 kb on + strand, within BNILDI_09585 at 1932.970 kb on + strand, within BNILDI_09585 at 1933.021 kb on + strand, within BNILDI_09585 at 1933.102 kb on + strand at 1933.102 kb on + strand at 1933.108 kb on - strand at 1933.233 kb on + strand at 1933.276 kb on + strand at 1933.276 kb on + strand at 1933.276 kb on + strand at 1933.277 kb on - strand at 1933.277 kb on - strand at 1933.277 kb on - strand at 1933.435 kb on + strand at 1933.435 kb on + strand at 1933.436 kb on - strand at 1933.436 kb on - strand at 1933.446 kb on + strand at 1933.495 kb on - strand at 1933.810 kb on - strand, within BNILDI_09590 at 1934.209 kb on + strand at 1934.304 kb on + strand at 1934.315 kb on - strand at 1934.488 kb on - strand, within BNILDI_09600 at 1934.541 kb on + strand, within BNILDI_09600 at 1934.542 kb on - strand, within BNILDI_09600 at 1934.553 kb on + strand, within BNILDI_09600 at 1934.587 kb on + strand, within BNILDI_09600 at 1934.588 kb on - strand, within BNILDI_09600 at 1934.588 kb on - strand, within BNILDI_09600 at 1934.643 kb on + strand, within BNILDI_09600 at 1934.647 kb on + strand, within BNILDI_09600 at 1934.701 kb on + strand, within BNILDI_09600 at 1934.727 kb on + strand, within BNILDI_09600 at 1934.851 kb on - strand, within BNILDI_09600 at 1934.851 kb on - strand, within BNILDI_09600 at 1934.851 kb on - strand, within BNILDI_09600 at 1934.863 kb on + strand, within BNILDI_09600
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,932,510 + BNILDI_09585 0.45 +0.0 1,932,511 - BNILDI_09585 0.45 +0.9 1,932,551 + BNILDI_09585 0.48 -0.2 1,932,767 + BNILDI_09585 0.66 +0.1 1,932,775 + BNILDI_09585 0.67 +1.0 1,932,822 + BNILDI_09585 0.71 -0.5 1,932,823 - BNILDI_09585 0.71 +0.6 1,932,884 + BNILDI_09585 0.76 -0.3 1,932,924 + BNILDI_09585 0.79 +0.5 1,932,970 + BNILDI_09585 0.83 +1.3 1,933,021 + BNILDI_09585 0.87 +0.1 1,933,102 + -0.3 1,933,102 + +0.1 1,933,108 - -0.0 1,933,233 + +0.8 1,933,276 + -0.6 1,933,276 + -0.7 1,933,276 + -0.0 1,933,277 - -0.7 1,933,277 - -2.0 1,933,277 - -0.2 1,933,435 + -0.5 1,933,435 + +1.4 1,933,436 - -0.5 1,933,436 - +0.2 1,933,446 + -0.5 1,933,495 - +0.7 1,933,810 - BNILDI_09590 0.85 -1.1 1,934,209 + +1.2 1,934,304 + +0.9 1,934,315 - +0.0 1,934,488 - BNILDI_09600 0.26 -1.0 1,934,541 + BNILDI_09600 0.31 -0.3 1,934,542 - BNILDI_09600 0.31 +0.3 1,934,553 + BNILDI_09600 0.32 -0.1 1,934,587 + BNILDI_09600 0.35 +0.0 1,934,588 - BNILDI_09600 0.35 -2.1 1,934,588 - BNILDI_09600 0.35 +0.5 1,934,643 + BNILDI_09600 0.40 +1.5 1,934,647 + BNILDI_09600 0.41 -0.5 1,934,701 + BNILDI_09600 0.46 -0.3 1,934,727 + BNILDI_09600 0.48 +0.5 1,934,851 - BNILDI_09600 0.60 -1.7 1,934,851 - BNILDI_09600 0.60 +0.4 1,934,851 - BNILDI_09600 0.60 -0.3 1,934,863 + BNILDI_09600 0.61 +0.2
Or see this region's nucleotide sequence