Strain Fitness in Escherichia coli ECRC62 around BNILDI_09590

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_09585 and BNILDI_09590 are separated by 304 nucleotidesBNILDI_09590 and tnp-IS1 are separated by 44 nucleotidestnp-IS1 and BNILDI_09600 are separated by 28 nucleotides BNILDI_09585: BNILDI_09585 - hypothetical protein, at 1,931,959 to 1,933,182 _09585 BNILDI_09590: BNILDI_09590 - IS1 family transposase, at 1,933,487 to 1,933,864 _09590 BNILDI_09595: tnp-IS1 - IS1 family transposase, at 1,933,909 to 1,934,184 tnp-IS1 BNILDI_09600: BNILDI_09600 - ShiA-like protein, at 1,934,213 to 1,935,280 _09600 Position (kb) 1933 1934Strain fitness (log2 ratio) -2 -1 0 1at 1932.510 kb on + strand, within BNILDI_09585at 1932.511 kb on - strand, within BNILDI_09585at 1932.551 kb on + strand, within BNILDI_09585at 1932.767 kb on + strand, within BNILDI_09585at 1932.775 kb on + strand, within BNILDI_09585at 1932.822 kb on + strand, within BNILDI_09585at 1932.823 kb on - strand, within BNILDI_09585at 1932.884 kb on + strand, within BNILDI_09585at 1932.924 kb on + strand, within BNILDI_09585at 1932.970 kb on + strand, within BNILDI_09585at 1933.021 kb on + strand, within BNILDI_09585at 1933.102 kb on + strandat 1933.102 kb on + strandat 1933.108 kb on - strandat 1933.233 kb on + strandat 1933.276 kb on + strandat 1933.276 kb on + strandat 1933.276 kb on + strandat 1933.277 kb on - strandat 1933.277 kb on - strandat 1933.277 kb on - strandat 1933.435 kb on + strandat 1933.435 kb on + strandat 1933.436 kb on - strandat 1933.436 kb on - strandat 1933.446 kb on + strandat 1933.495 kb on - strandat 1933.810 kb on - strand, within BNILDI_09590at 1934.209 kb on + strandat 1934.304 kb on + strandat 1934.315 kb on - strandat 1934.488 kb on - strand, within BNILDI_09600at 1934.541 kb on + strand, within BNILDI_09600at 1934.542 kb on - strand, within BNILDI_09600at 1934.553 kb on + strand, within BNILDI_09600at 1934.587 kb on + strand, within BNILDI_09600at 1934.588 kb on - strand, within BNILDI_09600at 1934.588 kb on - strand, within BNILDI_09600at 1934.643 kb on + strand, within BNILDI_09600at 1934.647 kb on + strand, within BNILDI_09600at 1934.701 kb on + strand, within BNILDI_09600at 1934.727 kb on + strand, within BNILDI_09600at 1934.851 kb on - strand, within BNILDI_09600at 1934.851 kb on - strand, within BNILDI_09600at 1934.851 kb on - strand, within BNILDI_09600at 1934.863 kb on + strand, within BNILDI_09600

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,932,510 + BNILDI_09585 0.45 +0.0
1,932,511 - BNILDI_09585 0.45 +0.9
1,932,551 + BNILDI_09585 0.48 -0.2
1,932,767 + BNILDI_09585 0.66 +0.1
1,932,775 + BNILDI_09585 0.67 +1.0
1,932,822 + BNILDI_09585 0.71 -0.5
1,932,823 - BNILDI_09585 0.71 +0.6
1,932,884 + BNILDI_09585 0.76 -0.3
1,932,924 + BNILDI_09585 0.79 +0.5
1,932,970 + BNILDI_09585 0.83 +1.3
1,933,021 + BNILDI_09585 0.87 +0.1
1,933,102 + -0.3
1,933,102 + +0.1
1,933,108 - -0.0
1,933,233 + +0.8
1,933,276 + -0.6
1,933,276 + -0.7
1,933,276 + -0.0
1,933,277 - -0.7
1,933,277 - -2.0
1,933,277 - -0.2
1,933,435 + -0.5
1,933,435 + +1.4
1,933,436 - -0.5
1,933,436 - +0.2
1,933,446 + -0.5
1,933,495 - +0.7
1,933,810 - BNILDI_09590 0.85 -1.1
1,934,209 + +1.2
1,934,304 + +0.9
1,934,315 - +0.0
1,934,488 - BNILDI_09600 0.26 -1.0
1,934,541 + BNILDI_09600 0.31 -0.3
1,934,542 - BNILDI_09600 0.31 +0.3
1,934,553 + BNILDI_09600 0.32 -0.1
1,934,587 + BNILDI_09600 0.35 +0.0
1,934,588 - BNILDI_09600 0.35 -2.1
1,934,588 - BNILDI_09600 0.35 +0.5
1,934,643 + BNILDI_09600 0.40 +1.5
1,934,647 + BNILDI_09600 0.41 -0.5
1,934,701 + BNILDI_09600 0.46 -0.3
1,934,727 + BNILDI_09600 0.48 +0.5
1,934,851 - BNILDI_09600 0.60 -1.7
1,934,851 - BNILDI_09600 0.60 +0.4
1,934,851 - BNILDI_09600 0.60 -0.3
1,934,863 + BNILDI_09600 0.61 +0.2

Or see this region's nucleotide sequence