Strain Fitness in Escherichia coli ECRC62 around BNILDI_08765

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdhR and aceE are separated by 160 nucleotidesaceE and aceF are separated by 14 nucleotides BNILDI_08755: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 1,751,184 to 1,751,948 pdhR BNILDI_08765: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 1,752,109 to 1,754,772 aceE BNILDI_08770: aceF - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 1,754,787 to 1,756,679 aceF Position (kb) 1752 1753 1754 1755Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1751.475 kb on + strand, within pdhRat 1751.520 kb on + strand, within pdhRat 1751.520 kb on + strand, within pdhRat 1751.538 kb on - strand, within pdhRat 1751.692 kb on + strand, within pdhRat 1751.699 kb on + strand, within pdhRat 1751.748 kb on + strand, within pdhRat 1751.797 kb on + strand, within pdhRat 1751.810 kb on + strand, within pdhRat 1752.286 kb on + strandat 1752.286 kb on + strandat 1752.286 kb on + strandat 1752.287 kb on - strandat 1752.352 kb on - strandat 1752.715 kb on - strand, within aceEat 1753.105 kb on + strand, within aceEat 1753.220 kb on - strand, within aceEat 1753.424 kb on - strand, within aceEat 1753.455 kb on + strand, within aceEat 1753.456 kb on - strand, within aceEat 1753.456 kb on - strand, within aceEat 1753.684 kb on - strand, within aceEat 1753.777 kb on + strand, within aceEat 1753.777 kb on + strand, within aceEat 1753.897 kb on + strand, within aceEat 1753.897 kb on + strand, within aceEat 1753.898 kb on - strand, within aceEat 1753.904 kb on - strand, within aceEat 1753.904 kb on - strand, within aceEat 1753.904 kb on - strand, within aceEat 1754.139 kb on + strand, within aceEat 1754.173 kb on + strand, within aceEat 1754.174 kb on - strand, within aceEat 1754.311 kb on - strand, within aceEat 1754.651 kb on - strandat 1754.948 kb on + strandat 1754.999 kb on + strand, within aceF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,751,475 + pdhR BNILDI_08755 0.38 -0.4
1,751,520 + pdhR BNILDI_08755 0.44 +2.2
1,751,520 + pdhR BNILDI_08755 0.44 +0.4
1,751,538 - pdhR BNILDI_08755 0.46 -0.4
1,751,692 + pdhR BNILDI_08755 0.66 -0.9
1,751,699 + pdhR BNILDI_08755 0.67 -1.3
1,751,748 + pdhR BNILDI_08755 0.74 +0.6
1,751,797 + pdhR BNILDI_08755 0.80 +0.4
1,751,810 + pdhR BNILDI_08755 0.82 -2.7
1,752,286 + -1.5
1,752,286 + -1.1
1,752,286 + -3.1
1,752,287 - -1.5
1,752,352 - -2.7
1,752,715 - aceE BNILDI_08765 0.23 -3.5
1,753,105 + aceE BNILDI_08765 0.37 +0.1
1,753,220 - aceE BNILDI_08765 0.42 +0.1
1,753,424 - aceE BNILDI_08765 0.49 -1.9
1,753,455 + aceE BNILDI_08765 0.51 -2.5
1,753,456 - aceE BNILDI_08765 0.51 -0.3
1,753,456 - aceE BNILDI_08765 0.51 -0.5
1,753,684 - aceE BNILDI_08765 0.59 -1.8
1,753,777 + aceE BNILDI_08765 0.63 -1.5
1,753,777 + aceE BNILDI_08765 0.63 -3.0
1,753,897 + aceE BNILDI_08765 0.67 -1.8
1,753,897 + aceE BNILDI_08765 0.67 -0.5
1,753,898 - aceE BNILDI_08765 0.67 +0.8
1,753,904 - aceE BNILDI_08765 0.67 -2.0
1,753,904 - aceE BNILDI_08765 0.67 -3.4
1,753,904 - aceE BNILDI_08765 0.67 +0.1
1,754,139 + aceE BNILDI_08765 0.76 -3.0
1,754,173 + aceE BNILDI_08765 0.77 -2.5
1,754,174 - aceE BNILDI_08765 0.78 -1.7
1,754,311 - aceE BNILDI_08765 0.83 -0.8
1,754,651 - -2.9
1,754,948 + -1.9
1,754,999 + aceF BNILDI_08770 0.11 -3.4

Or see this region's nucleotide sequence