Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdhR and aceE are separated by 160 nucleotides aceE and aceF are separated by 14 nucleotides
BNILDI_08755: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 1,751,184 to 1,751,948
pdhR
BNILDI_08765: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 1,752,109 to 1,754,772
aceE
BNILDI_08770: aceF - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 1,754,787 to 1,756,679
aceF
Position (kb)
1752
1753
1754
1755 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1751.475 kb on + strand, within pdhR at 1751.520 kb on + strand, within pdhR at 1751.520 kb on + strand, within pdhR at 1751.538 kb on - strand, within pdhR at 1751.692 kb on + strand, within pdhR at 1751.699 kb on + strand, within pdhR at 1751.748 kb on + strand, within pdhR at 1751.797 kb on + strand, within pdhR at 1751.810 kb on + strand, within pdhR at 1752.286 kb on + strand at 1752.286 kb on + strand at 1752.286 kb on + strand at 1752.287 kb on - strand at 1752.352 kb on - strand at 1752.715 kb on - strand, within aceE at 1753.105 kb on + strand, within aceE at 1753.220 kb on - strand, within aceE at 1753.424 kb on - strand, within aceE at 1753.455 kb on + strand, within aceE at 1753.456 kb on - strand, within aceE at 1753.456 kb on - strand, within aceE at 1753.684 kb on - strand, within aceE at 1753.777 kb on + strand, within aceE at 1753.777 kb on + strand, within aceE at 1753.897 kb on + strand, within aceE at 1753.897 kb on + strand, within aceE at 1753.898 kb on - strand, within aceE at 1753.904 kb on - strand, within aceE at 1753.904 kb on - strand, within aceE at 1753.904 kb on - strand, within aceE at 1754.139 kb on + strand, within aceE at 1754.173 kb on + strand, within aceE at 1754.174 kb on - strand, within aceE at 1754.311 kb on - strand, within aceE at 1754.651 kb on - strand at 1754.948 kb on + strand at 1754.999 kb on + strand, within aceF
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,751,475 + pdhR BNILDI_08755 0.38 -0.4 1,751,520 + pdhR BNILDI_08755 0.44 +2.2 1,751,520 + pdhR BNILDI_08755 0.44 +0.4 1,751,538 - pdhR BNILDI_08755 0.46 -0.4 1,751,692 + pdhR BNILDI_08755 0.66 -0.9 1,751,699 + pdhR BNILDI_08755 0.67 -1.3 1,751,748 + pdhR BNILDI_08755 0.74 +0.6 1,751,797 + pdhR BNILDI_08755 0.80 +0.4 1,751,810 + pdhR BNILDI_08755 0.82 -2.7 1,752,286 + -1.5 1,752,286 + -1.1 1,752,286 + -3.1 1,752,287 - -1.5 1,752,352 - -2.7 1,752,715 - aceE BNILDI_08765 0.23 -3.5 1,753,105 + aceE BNILDI_08765 0.37 +0.1 1,753,220 - aceE BNILDI_08765 0.42 +0.1 1,753,424 - aceE BNILDI_08765 0.49 -1.9 1,753,455 + aceE BNILDI_08765 0.51 -2.5 1,753,456 - aceE BNILDI_08765 0.51 -0.3 1,753,456 - aceE BNILDI_08765 0.51 -0.5 1,753,684 - aceE BNILDI_08765 0.59 -1.8 1,753,777 + aceE BNILDI_08765 0.63 -1.5 1,753,777 + aceE BNILDI_08765 0.63 -3.0 1,753,897 + aceE BNILDI_08765 0.67 -1.8 1,753,897 + aceE BNILDI_08765 0.67 -0.5 1,753,898 - aceE BNILDI_08765 0.67 +0.8 1,753,904 - aceE BNILDI_08765 0.67 -2.0 1,753,904 - aceE BNILDI_08765 0.67 -3.4 1,753,904 - aceE BNILDI_08765 0.67 +0.1 1,754,139 + aceE BNILDI_08765 0.76 -3.0 1,754,173 + aceE BNILDI_08765 0.77 -2.5 1,754,174 - aceE BNILDI_08765 0.78 -1.7 1,754,311 - aceE BNILDI_08765 0.83 -0.8 1,754,651 - -2.9 1,754,948 + -1.9 1,754,999 + aceF BNILDI_08770 0.11 -3.4
Or see this region's nucleotide sequence