Strain Fitness in Escherichia coli ECRC62 around BNILDI_08555

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_08550 and leuL are separated by 92 nucleotidesleuL and leuO are separated by 659 nucleotides BNILDI_08550: BNILDI_08550 - 2-isopropylmalate synthase, at 1,711,166 to 1,712,737 _08550 BNILDI_08555: leuL - leu operon leader peptide, at 1,712,830 to 1,712,916 leuL BNILDI_08560: leuO - transcriptional regulator LeuO, at 1,713,576 to 1,714,520 leuO Position (kb) 1712 1713Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1711.904 kb on - strand, within BNILDI_08550at 1711.918 kb on + strand, within BNILDI_08550at 1711.922 kb on + strand, within BNILDI_08550at 1711.923 kb on - strand, within BNILDI_08550at 1711.978 kb on + strand, within BNILDI_08550at 1712.084 kb on + strand, within BNILDI_08550at 1712.084 kb on + strand, within BNILDI_08550at 1712.131 kb on + strand, within BNILDI_08550at 1712.132 kb on - strand, within BNILDI_08550at 1712.132 kb on - strand, within BNILDI_08550at 1712.144 kb on - strand, within BNILDI_08550at 1712.161 kb on + strand, within BNILDI_08550at 1712.161 kb on + strand, within BNILDI_08550at 1712.165 kb on + strand, within BNILDI_08550at 1712.176 kb on - strand, within BNILDI_08550at 1712.302 kb on + strand, within BNILDI_08550at 1712.367 kb on + strand, within BNILDI_08550at 1712.367 kb on + strand, within BNILDI_08550at 1712.367 kb on + strand, within BNILDI_08550at 1712.367 kb on + strand, within BNILDI_08550at 1712.367 kb on + strand, within BNILDI_08550at 1712.367 kb on + strand, within BNILDI_08550at 1712.368 kb on - strand, within BNILDI_08550at 1712.368 kb on - strand, within BNILDI_08550at 1712.368 kb on - strand, within BNILDI_08550at 1712.368 kb on - strand, within BNILDI_08550at 1712.498 kb on - strand, within BNILDI_08550at 1712.528 kb on + strand, within BNILDI_08550at 1712.529 kb on - strand, within BNILDI_08550at 1712.719 kb on + strandat 1712.781 kb on - strandat 1712.831 kb on + strandat 1712.856 kb on + strand, within leuLat 1712.882 kb on - strand, within leuLat 1712.917 kb on + strandat 1712.942 kb on - strandat 1712.942 kb on - strandat 1712.964 kb on - strandat 1713.267 kb on - strandat 1713.308 kb on + strandat 1713.553 kb on + strandat 1713.554 kb on - strandat 1713.571 kb on + strandat 1713.572 kb on - strandat 1713.913 kb on + strand, within leuOat 1713.913 kb on + strand, within leuOat 1713.914 kb on - strand, within leuO

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,711,904 - BNILDI_08550 0.47 -5.1
1,711,918 + BNILDI_08550 0.48 -5.4
1,711,922 + BNILDI_08550 0.48 -4.0
1,711,923 - BNILDI_08550 0.48 -5.7
1,711,978 + BNILDI_08550 0.52 -2.8
1,712,084 + BNILDI_08550 0.58 -3.6
1,712,084 + BNILDI_08550 0.58 -3.2
1,712,131 + BNILDI_08550 0.61 -3.5
1,712,132 - BNILDI_08550 0.61 -6.2
1,712,132 - BNILDI_08550 0.61 -4.9
1,712,144 - BNILDI_08550 0.62 -5.5
1,712,161 + BNILDI_08550 0.63 -3.6
1,712,161 + BNILDI_08550 0.63 -4.5
1,712,165 + BNILDI_08550 0.64 -5.2
1,712,176 - BNILDI_08550 0.64 -3.4
1,712,302 + BNILDI_08550 0.72 -5.0
1,712,367 + BNILDI_08550 0.76 -4.2
1,712,367 + BNILDI_08550 0.76 -4.2
1,712,367 + BNILDI_08550 0.76 -5.1
1,712,367 + BNILDI_08550 0.76 -1.3
1,712,367 + BNILDI_08550 0.76 -1.3
1,712,367 + BNILDI_08550 0.76 -5.2
1,712,368 - BNILDI_08550 0.76 -3.6
1,712,368 - BNILDI_08550 0.76 -3.3
1,712,368 - BNILDI_08550 0.76 -2.8
1,712,368 - BNILDI_08550 0.76 -2.7
1,712,498 - BNILDI_08550 0.85 -5.0
1,712,528 + BNILDI_08550 0.87 -5.1
1,712,529 - BNILDI_08550 0.87 -4.1
1,712,719 + -3.5
1,712,781 - -0.7
1,712,831 + -2.8
1,712,856 + leuL BNILDI_08555 0.30 -5.5
1,712,882 - leuL BNILDI_08555 0.60 -0.8
1,712,917 + -3.7
1,712,942 - +0.6
1,712,942 - -0.7
1,712,964 - -2.1
1,713,267 - +0.4
1,713,308 + +0.3
1,713,553 + -0.2
1,713,554 - -0.1
1,713,571 + +0.1
1,713,572 - -0.2
1,713,913 + leuO BNILDI_08560 0.36 -0.4
1,713,913 + leuO BNILDI_08560 0.36 +0.2
1,713,914 - leuO BNILDI_08560 0.36 +1.4

Or see this region's nucleotide sequence