Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_08550 and leuL are separated by 92 nucleotides leuL and leuO are separated by 659 nucleotides
BNILDI_08550: BNILDI_08550 - 2-isopropylmalate synthase, at 1,711,166 to 1,712,737
_08550
BNILDI_08555: leuL - leu operon leader peptide, at 1,712,830 to 1,712,916
leuL
BNILDI_08560: leuO - transcriptional regulator LeuO, at 1,713,576 to 1,714,520
leuO
Position (kb)
1712
1713 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1711.904 kb on - strand, within BNILDI_08550 at 1711.918 kb on + strand, within BNILDI_08550 at 1711.922 kb on + strand, within BNILDI_08550 at 1711.923 kb on - strand, within BNILDI_08550 at 1711.978 kb on + strand, within BNILDI_08550 at 1712.084 kb on + strand, within BNILDI_08550 at 1712.084 kb on + strand, within BNILDI_08550 at 1712.131 kb on + strand, within BNILDI_08550 at 1712.132 kb on - strand, within BNILDI_08550 at 1712.132 kb on - strand, within BNILDI_08550 at 1712.144 kb on - strand, within BNILDI_08550 at 1712.161 kb on + strand, within BNILDI_08550 at 1712.161 kb on + strand, within BNILDI_08550 at 1712.165 kb on + strand, within BNILDI_08550 at 1712.176 kb on - strand, within BNILDI_08550 at 1712.302 kb on + strand, within BNILDI_08550 at 1712.367 kb on + strand, within BNILDI_08550 at 1712.367 kb on + strand, within BNILDI_08550 at 1712.367 kb on + strand, within BNILDI_08550 at 1712.367 kb on + strand, within BNILDI_08550 at 1712.367 kb on + strand, within BNILDI_08550 at 1712.367 kb on + strand, within BNILDI_08550 at 1712.368 kb on - strand, within BNILDI_08550 at 1712.368 kb on - strand, within BNILDI_08550 at 1712.368 kb on - strand, within BNILDI_08550 at 1712.368 kb on - strand, within BNILDI_08550 at 1712.498 kb on - strand, within BNILDI_08550 at 1712.528 kb on + strand, within BNILDI_08550 at 1712.529 kb on - strand, within BNILDI_08550 at 1712.719 kb on + strand at 1712.781 kb on - strand at 1712.831 kb on + strand at 1712.856 kb on + strand, within leuL at 1712.882 kb on - strand, within leuL at 1712.917 kb on + strand at 1712.942 kb on - strand at 1712.942 kb on - strand at 1712.964 kb on - strand at 1713.267 kb on - strand at 1713.308 kb on + strand at 1713.553 kb on + strand at 1713.554 kb on - strand at 1713.571 kb on + strand at 1713.572 kb on - strand at 1713.913 kb on + strand, within leuO at 1713.913 kb on + strand, within leuO at 1713.914 kb on - strand, within leuO
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,711,904 - BNILDI_08550 0.47 -5.1 1,711,918 + BNILDI_08550 0.48 -5.4 1,711,922 + BNILDI_08550 0.48 -4.0 1,711,923 - BNILDI_08550 0.48 -5.7 1,711,978 + BNILDI_08550 0.52 -2.8 1,712,084 + BNILDI_08550 0.58 -3.6 1,712,084 + BNILDI_08550 0.58 -3.2 1,712,131 + BNILDI_08550 0.61 -3.5 1,712,132 - BNILDI_08550 0.61 -6.2 1,712,132 - BNILDI_08550 0.61 -4.9 1,712,144 - BNILDI_08550 0.62 -5.5 1,712,161 + BNILDI_08550 0.63 -3.6 1,712,161 + BNILDI_08550 0.63 -4.5 1,712,165 + BNILDI_08550 0.64 -5.2 1,712,176 - BNILDI_08550 0.64 -3.4 1,712,302 + BNILDI_08550 0.72 -5.0 1,712,367 + BNILDI_08550 0.76 -4.2 1,712,367 + BNILDI_08550 0.76 -4.2 1,712,367 + BNILDI_08550 0.76 -5.1 1,712,367 + BNILDI_08550 0.76 -1.3 1,712,367 + BNILDI_08550 0.76 -1.3 1,712,367 + BNILDI_08550 0.76 -5.2 1,712,368 - BNILDI_08550 0.76 -3.6 1,712,368 - BNILDI_08550 0.76 -3.3 1,712,368 - BNILDI_08550 0.76 -2.8 1,712,368 - BNILDI_08550 0.76 -2.7 1,712,498 - BNILDI_08550 0.85 -5.0 1,712,528 + BNILDI_08550 0.87 -5.1 1,712,529 - BNILDI_08550 0.87 -4.1 1,712,719 + -3.5 1,712,781 - -0.7 1,712,831 + -2.8 1,712,856 + leuL BNILDI_08555 0.30 -5.5 1,712,882 - leuL BNILDI_08555 0.60 -0.8 1,712,917 + -3.7 1,712,942 - +0.6 1,712,942 - -0.7 1,712,964 - -2.1 1,713,267 - +0.4 1,713,308 + +0.3 1,713,553 + -0.2 1,713,554 - -0.1 1,713,571 + +0.1 1,713,572 - -0.2 1,713,913 + leuO BNILDI_08560 0.36 -0.4 1,713,913 + leuO BNILDI_08560 0.36 +0.2 1,713,914 - leuO BNILDI_08560 0.36 +1.4
Or see this region's nucleotide sequence