Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mgtA and BNILDI_07370 are separated by 44 nucleotides BNILDI_07370 and ridA are separated by 65 nucleotides ridA and pyrI are separated by 72 nucleotides pyrI and pyrB are separated by 12 nucleotides
BNILDI_07365: mgtA - magnesium-translocating P-type ATPase, at 1,469,606 to 1,472,302
mgtA
BNILDI_07370: BNILDI_07370 - transposase, at 1,472,347 to 1,472,802
_07370
BNILDI_07375: ridA - 2-iminobutanoate/2-iminopropanoate deaminase, at 1,472,868 to 1,473,254
ridA
BNILDI_07380: pyrI - aspartate carbamoyltransferase regulatory subunit, at 1,473,327 to 1,473,788
pyrI
BNILDI_07385: pyrB - aspartate carbamoyltransferase, at 1,473,801 to 1,474,736
pyrB
Position (kb)
1472
1473 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1471.385 kb on - strand, within mgtA at 1471.401 kb on + strand, within mgtA at 1471.488 kb on + strand, within mgtA at 1471.489 kb on - strand, within mgtA at 1471.531 kb on + strand, within mgtA at 1471.531 kb on + strand, within mgtA at 1471.697 kb on + strand, within mgtA at 1471.815 kb on - strand, within mgtA at 1471.815 kb on - strand, within mgtA at 1472.062 kb on + strand at 1472.063 kb on - strand at 1472.090 kb on - strand at 1472.206 kb on - strand at 1472.245 kb on + strand at 1472.327 kb on + strand at 1472.378 kb on - strand at 1472.432 kb on + strand, within BNILDI_07370 at 1472.530 kb on + strand, within BNILDI_07370 at 1472.559 kb on + strand, within BNILDI_07370 at 1472.584 kb on + strand, within BNILDI_07370 at 1472.712 kb on - strand, within BNILDI_07370 at 1472.722 kb on + strand, within BNILDI_07370 at 1472.733 kb on + strand, within BNILDI_07370 at 1472.829 kb on + strand at 1472.867 kb on - strand at 1472.983 kb on + strand, within ridA at 1473.084 kb on + strand, within ridA at 1473.085 kb on - strand, within ridA at 1473.085 kb on - strand, within ridA at 1473.201 kb on + strand, within ridA at 1473.202 kb on - strand, within ridA at 1473.216 kb on - strand at 1473.269 kb on + strand at 1473.296 kb on + strand at 1473.312 kb on + strand at 1473.328 kb on + strand at 1473.370 kb on + strand at 1473.370 kb on + strand at 1473.370 kb on + strand at 1473.446 kb on + strand, within pyrI at 1473.446 kb on + strand, within pyrI at 1473.523 kb on + strand, within pyrI at 1473.524 kb on - strand, within pyrI at 1473.559 kb on + strand, within pyrI at 1473.559 kb on + strand, within pyrI at 1473.729 kb on - strand, within pyrI at 1473.739 kb on - strand, within pyrI at 1473.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,471,385 - mgtA BNILDI_07365 0.66 +0.3 1,471,401 + mgtA BNILDI_07365 0.67 -1.0 1,471,488 + mgtA BNILDI_07365 0.70 -0.3 1,471,489 - mgtA BNILDI_07365 0.70 -0.8 1,471,531 + mgtA BNILDI_07365 0.71 -0.1 1,471,531 + mgtA BNILDI_07365 0.71 -0.3 1,471,697 + mgtA BNILDI_07365 0.78 +0.2 1,471,815 - mgtA BNILDI_07365 0.82 +0.4 1,471,815 - mgtA BNILDI_07365 0.82 +0.2 1,472,062 + +0.3 1,472,063 - +0.1 1,472,090 - +0.5 1,472,206 - +1.7 1,472,245 + +0.2 1,472,327 + -0.5 1,472,378 - +0.0 1,472,432 + BNILDI_07370 0.19 -0.5 1,472,530 + BNILDI_07370 0.40 +1.5 1,472,559 + BNILDI_07370 0.46 +0.0 1,472,584 + BNILDI_07370 0.52 +0.3 1,472,712 - BNILDI_07370 0.80 -0.1 1,472,722 + BNILDI_07370 0.82 +0.2 1,472,733 + BNILDI_07370 0.85 +0.3 1,472,829 + +0.1 1,472,867 - +0.1 1,472,983 + ridA BNILDI_07375 0.30 +0.3 1,473,084 + ridA BNILDI_07375 0.56 -0.6 1,473,085 - ridA BNILDI_07375 0.56 -0.8 1,473,085 - ridA BNILDI_07375 0.56 +0.0 1,473,201 + ridA BNILDI_07375 0.86 +1.5 1,473,202 - ridA BNILDI_07375 0.86 -1.8 1,473,216 - +0.0 1,473,269 + +1.4 1,473,296 + +0.5 1,473,312 + +0.0 1,473,328 + +1.0 1,473,370 + +0.7 1,473,370 + +0.7 1,473,370 + -0.2 1,473,446 + pyrI BNILDI_07380 0.26 +0.9 1,473,446 + pyrI BNILDI_07380 0.26 +0.7 1,473,523 + pyrI BNILDI_07380 0.42 +0.5 1,473,524 - pyrI BNILDI_07380 0.43 +0.7 1,473,559 + pyrI BNILDI_07380 0.50 -0.7 1,473,559 + pyrI BNILDI_07380 0.50 +2.3 1,473,729 - pyrI BNILDI_07380 0.87 +1.2 1,473,739 - pyrI BNILDI_07380 0.89 +0.0 1,473,793 - -0.1
Or see this region's nucleotide sequence