Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_07150 and BNILDI_07155 are separated by 9 nucleotides BNILDI_07155 and BNILDI_07160 are separated by 9 nucleotides BNILDI_07160 and BNILDI_07165 overlap by 4 nucleotides BNILDI_07165 and fabG are separated by 9 nucleotides
BNILDI_07150: BNILDI_07150 - acyl CoA:acetate/3-ketoacid CoA transferase, at 1,426,354 to 1,427,895
_07150
BNILDI_07155: BNILDI_07155 - acyl-CoA hydratase, at 1,427,905 to 1,428,681
_07155
BNILDI_07160: BNILDI_07160 - 4-hydroxyphenylpyruvate dioxygenase, at 1,428,691 to 1,429,347
_07160
BNILDI_07165: BNILDI_07165 - Hydroxypyruvate isomerase, at 1,429,344 to 1,429,532
_07165
BNILDI_07170: fabG - 3-ketoacyl-ACP reductase, at 1,429,542 to 1,430,333
fabG
Position (kb)
1427
1428
1429 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1426.905 kb on + strand, within BNILDI_07150 at 1426.906 kb on - strand, within BNILDI_07150 at 1426.949 kb on + strand, within BNILDI_07150 at 1426.996 kb on - strand, within BNILDI_07150 at 1427.027 kb on - strand, within BNILDI_07150 at 1427.138 kb on + strand, within BNILDI_07150 at 1427.303 kb on + strand, within BNILDI_07150 at 1427.360 kb on + strand, within BNILDI_07150 at 1427.555 kb on - strand, within BNILDI_07150 at 1427.605 kb on - strand, within BNILDI_07150 at 1427.692 kb on - strand, within BNILDI_07150 at 1427.782 kb on - strand at 1427.794 kb on - strand at 1427.889 kb on + strand at 1427.889 kb on + strand at 1427.889 kb on + strand at 1427.890 kb on - strand at 1427.896 kb on - strand at 1427.996 kb on - strand, within BNILDI_07155 at 1428.021 kb on + strand, within BNILDI_07155 at 1428.022 kb on - strand, within BNILDI_07155 at 1428.049 kb on - strand, within BNILDI_07155 at 1428.049 kb on - strand, within BNILDI_07155 at 1428.145 kb on + strand, within BNILDI_07155 at 1428.229 kb on - strand, within BNILDI_07155 at 1428.312 kb on + strand, within BNILDI_07155 at 1428.451 kb on + strand, within BNILDI_07155 at 1428.452 kb on - strand, within BNILDI_07155 at 1428.461 kb on + strand, within BNILDI_07155 at 1428.478 kb on - strand, within BNILDI_07155 at 1428.739 kb on - strand at 1428.739 kb on - strand at 1428.741 kb on + strand at 1428.742 kb on - strand at 1428.783 kb on + strand, within BNILDI_07160 at 1428.856 kb on - strand, within BNILDI_07160 at 1428.974 kb on + strand, within BNILDI_07160 at 1428.974 kb on + strand, within BNILDI_07160 at 1428.975 kb on - strand, within BNILDI_07160 at 1428.982 kb on + strand, within BNILDI_07160 at 1429.048 kb on + strand, within BNILDI_07160 at 1429.179 kb on - strand, within BNILDI_07160 at 1429.180 kb on + strand, within BNILDI_07160 at 1429.180 kb on + strand, within BNILDI_07160 at 1429.181 kb on - strand, within BNILDI_07160 at 1429.181 kb on - strand, within BNILDI_07160 at 1429.181 kb on - strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.224 kb on - strand, within BNILDI_07160 at 1429.224 kb on - strand, within BNILDI_07160 at 1429.240 kb on + strand, within BNILDI_07160 at 1429.313 kb on + strand at 1429.314 kb on - strand at 1429.314 kb on - strand at 1429.316 kb on + strand at 1429.316 kb on + strand at 1429.317 kb on - strand at 1429.350 kb on + strand at 1429.473 kb on - strand, within BNILDI_07165 at 1429.504 kb on - strand, within BNILDI_07165 at 1429.518 kb on + strand at 1429.519 kb on - strand at 1429.557 kb on - strand at 1429.557 kb on - strand at 1429.561 kb on - strand at 1429.598 kb on - strand at 1429.607 kb on + strand at 1429.641 kb on - strand, within fabG
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,426,905 + BNILDI_07150 0.36 +0.1 1,426,906 - BNILDI_07150 0.36 -0.2 1,426,949 + BNILDI_07150 0.39 -2.3 1,426,996 - BNILDI_07150 0.42 +0.1 1,427,027 - BNILDI_07150 0.44 +0.3 1,427,138 + BNILDI_07150 0.51 +0.1 1,427,303 + BNILDI_07150 0.62 +0.5 1,427,360 + BNILDI_07150 0.65 -0.1 1,427,555 - BNILDI_07150 0.78 -0.9 1,427,605 - BNILDI_07150 0.81 +0.2 1,427,692 - BNILDI_07150 0.87 -0.4 1,427,782 - -0.6 1,427,794 - -0.1 1,427,889 + -0.0 1,427,889 + -1.0 1,427,889 + +0.2 1,427,890 - +0.2 1,427,896 - -1.2 1,427,996 - BNILDI_07155 0.12 -0.5 1,428,021 + BNILDI_07155 0.15 +0.7 1,428,022 - BNILDI_07155 0.15 -0.4 1,428,049 - BNILDI_07155 0.19 -0.5 1,428,049 - BNILDI_07155 0.19 +0.1 1,428,145 + BNILDI_07155 0.31 +0.1 1,428,229 - BNILDI_07155 0.42 -0.3 1,428,312 + BNILDI_07155 0.52 -0.3 1,428,451 + BNILDI_07155 0.70 +0.1 1,428,452 - BNILDI_07155 0.70 +0.4 1,428,461 + BNILDI_07155 0.72 -0.1 1,428,478 - BNILDI_07155 0.74 +0.8 1,428,739 - +1.3 1,428,739 - +1.2 1,428,741 + -0.9 1,428,742 - +1.1 1,428,783 + BNILDI_07160 0.14 +0.2 1,428,856 - BNILDI_07160 0.25 +0.1 1,428,974 + BNILDI_07160 0.43 +0.8 1,428,974 + BNILDI_07160 0.43 +1.3 1,428,975 - BNILDI_07160 0.43 +1.3 1,428,982 + BNILDI_07160 0.44 +1.7 1,429,048 + BNILDI_07160 0.54 +0.4 1,429,179 - BNILDI_07160 0.74 +0.4 1,429,180 + BNILDI_07160 0.74 +0.5 1,429,180 + BNILDI_07160 0.74 -1.0 1,429,181 - BNILDI_07160 0.75 -0.4 1,429,181 - BNILDI_07160 0.75 -1.0 1,429,181 - BNILDI_07160 0.75 -0.0 1,429,221 + BNILDI_07160 0.81 -0.1 1,429,221 + BNILDI_07160 0.81 -0.2 1,429,221 + BNILDI_07160 0.81 +0.2 1,429,221 + BNILDI_07160 0.81 +0.2 1,429,221 + BNILDI_07160 0.81 +0.4 1,429,222 - BNILDI_07160 0.81 -0.7 1,429,222 - BNILDI_07160 0.81 +0.7 1,429,222 - BNILDI_07160 0.81 -0.1 1,429,222 - BNILDI_07160 0.81 -0.4 1,429,222 - BNILDI_07160 0.81 -0.6 1,429,224 - BNILDI_07160 0.81 +0.4 1,429,224 - BNILDI_07160 0.81 +0.5 1,429,240 + BNILDI_07160 0.84 +0.0 1,429,313 + +1.2 1,429,314 - -0.3 1,429,314 - -0.1 1,429,316 + +0.1 1,429,316 + -0.1 1,429,317 - -1.3 1,429,350 + +0.1 1,429,473 - BNILDI_07165 0.68 -0.3 1,429,504 - BNILDI_07165 0.85 +0.9 1,429,518 + -1.4 1,429,519 - -0.6 1,429,557 - +2.0 1,429,557 - -0.4 1,429,561 - +0.4 1,429,598 - +0.8 1,429,607 + +0.6 1,429,641 - fabG BNILDI_07170 0.12 +0.2
Or see this region's nucleotide sequence