Strain Fitness in Escherichia coli ECRC62 around BNILDI_07155

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_07150 and BNILDI_07155 are separated by 9 nucleotidesBNILDI_07155 and BNILDI_07160 are separated by 9 nucleotidesBNILDI_07160 and BNILDI_07165 overlap by 4 nucleotidesBNILDI_07165 and fabG are separated by 9 nucleotides BNILDI_07150: BNILDI_07150 - acyl CoA:acetate/3-ketoacid CoA transferase, at 1,426,354 to 1,427,895 _07150 BNILDI_07155: BNILDI_07155 - acyl-CoA hydratase, at 1,427,905 to 1,428,681 _07155 BNILDI_07160: BNILDI_07160 - 4-hydroxyphenylpyruvate dioxygenase, at 1,428,691 to 1,429,347 _07160 BNILDI_07165: BNILDI_07165 - Hydroxypyruvate isomerase, at 1,429,344 to 1,429,532 _07165 BNILDI_07170: fabG - 3-ketoacyl-ACP reductase, at 1,429,542 to 1,430,333 fabG Position (kb) 1427 1428 1429Strain fitness (log2 ratio) -2 -1 0 1 2at 1426.905 kb on + strand, within BNILDI_07150at 1426.906 kb on - strand, within BNILDI_07150at 1426.949 kb on + strand, within BNILDI_07150at 1426.996 kb on - strand, within BNILDI_07150at 1427.027 kb on - strand, within BNILDI_07150at 1427.138 kb on + strand, within BNILDI_07150at 1427.303 kb on + strand, within BNILDI_07150at 1427.360 kb on + strand, within BNILDI_07150at 1427.555 kb on - strand, within BNILDI_07150at 1427.605 kb on - strand, within BNILDI_07150at 1427.692 kb on - strand, within BNILDI_07150at 1427.782 kb on - strandat 1427.794 kb on - strandat 1427.889 kb on + strandat 1427.889 kb on + strandat 1427.889 kb on + strandat 1427.890 kb on - strandat 1427.896 kb on - strandat 1427.996 kb on - strand, within BNILDI_07155at 1428.021 kb on + strand, within BNILDI_07155at 1428.022 kb on - strand, within BNILDI_07155at 1428.049 kb on - strand, within BNILDI_07155at 1428.049 kb on - strand, within BNILDI_07155at 1428.145 kb on + strand, within BNILDI_07155at 1428.229 kb on - strand, within BNILDI_07155at 1428.312 kb on + strand, within BNILDI_07155at 1428.451 kb on + strand, within BNILDI_07155at 1428.452 kb on - strand, within BNILDI_07155at 1428.461 kb on + strand, within BNILDI_07155at 1428.478 kb on - strand, within BNILDI_07155at 1428.739 kb on - strandat 1428.739 kb on - strandat 1428.741 kb on + strandat 1428.742 kb on - strandat 1428.783 kb on + strand, within BNILDI_07160at 1428.856 kb on - strand, within BNILDI_07160at 1428.974 kb on + strand, within BNILDI_07160at 1428.974 kb on + strand, within BNILDI_07160at 1428.975 kb on - strand, within BNILDI_07160at 1428.982 kb on + strand, within BNILDI_07160at 1429.048 kb on + strand, within BNILDI_07160at 1429.179 kb on - strand, within BNILDI_07160at 1429.180 kb on + strand, within BNILDI_07160at 1429.180 kb on + strand, within BNILDI_07160at 1429.181 kb on - strand, within BNILDI_07160at 1429.181 kb on - strand, within BNILDI_07160at 1429.181 kb on - strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.224 kb on - strand, within BNILDI_07160at 1429.224 kb on - strand, within BNILDI_07160at 1429.240 kb on + strand, within BNILDI_07160at 1429.313 kb on + strandat 1429.314 kb on - strandat 1429.314 kb on - strandat 1429.316 kb on + strandat 1429.316 kb on + strandat 1429.317 kb on - strandat 1429.350 kb on + strandat 1429.473 kb on - strand, within BNILDI_07165at 1429.504 kb on - strand, within BNILDI_07165at 1429.518 kb on + strandat 1429.519 kb on - strandat 1429.557 kb on - strandat 1429.557 kb on - strandat 1429.561 kb on - strandat 1429.598 kb on - strandat 1429.607 kb on + strandat 1429.641 kb on - strand, within fabG

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,426,905 + BNILDI_07150 0.36 +0.1
1,426,906 - BNILDI_07150 0.36 -0.2
1,426,949 + BNILDI_07150 0.39 -2.3
1,426,996 - BNILDI_07150 0.42 +0.1
1,427,027 - BNILDI_07150 0.44 +0.3
1,427,138 + BNILDI_07150 0.51 +0.1
1,427,303 + BNILDI_07150 0.62 +0.5
1,427,360 + BNILDI_07150 0.65 -0.1
1,427,555 - BNILDI_07150 0.78 -0.9
1,427,605 - BNILDI_07150 0.81 +0.2
1,427,692 - BNILDI_07150 0.87 -0.4
1,427,782 - -0.6
1,427,794 - -0.1
1,427,889 + -0.0
1,427,889 + -1.0
1,427,889 + +0.2
1,427,890 - +0.2
1,427,896 - -1.2
1,427,996 - BNILDI_07155 0.12 -0.5
1,428,021 + BNILDI_07155 0.15 +0.7
1,428,022 - BNILDI_07155 0.15 -0.4
1,428,049 - BNILDI_07155 0.19 -0.5
1,428,049 - BNILDI_07155 0.19 +0.1
1,428,145 + BNILDI_07155 0.31 +0.1
1,428,229 - BNILDI_07155 0.42 -0.3
1,428,312 + BNILDI_07155 0.52 -0.3
1,428,451 + BNILDI_07155 0.70 +0.1
1,428,452 - BNILDI_07155 0.70 +0.4
1,428,461 + BNILDI_07155 0.72 -0.1
1,428,478 - BNILDI_07155 0.74 +0.8
1,428,739 - +1.3
1,428,739 - +1.2
1,428,741 + -0.9
1,428,742 - +1.1
1,428,783 + BNILDI_07160 0.14 +0.2
1,428,856 - BNILDI_07160 0.25 +0.1
1,428,974 + BNILDI_07160 0.43 +0.8
1,428,974 + BNILDI_07160 0.43 +1.3
1,428,975 - BNILDI_07160 0.43 +1.3
1,428,982 + BNILDI_07160 0.44 +1.7
1,429,048 + BNILDI_07160 0.54 +0.4
1,429,179 - BNILDI_07160 0.74 +0.4
1,429,180 + BNILDI_07160 0.74 +0.5
1,429,180 + BNILDI_07160 0.74 -1.0
1,429,181 - BNILDI_07160 0.75 -0.4
1,429,181 - BNILDI_07160 0.75 -1.0
1,429,181 - BNILDI_07160 0.75 -0.0
1,429,221 + BNILDI_07160 0.81 -0.1
1,429,221 + BNILDI_07160 0.81 -0.2
1,429,221 + BNILDI_07160 0.81 +0.2
1,429,221 + BNILDI_07160 0.81 +0.2
1,429,221 + BNILDI_07160 0.81 +0.4
1,429,222 - BNILDI_07160 0.81 -0.7
1,429,222 - BNILDI_07160 0.81 +0.7
1,429,222 - BNILDI_07160 0.81 -0.1
1,429,222 - BNILDI_07160 0.81 -0.4
1,429,222 - BNILDI_07160 0.81 -0.6
1,429,224 - BNILDI_07160 0.81 +0.4
1,429,224 - BNILDI_07160 0.81 +0.5
1,429,240 + BNILDI_07160 0.84 +0.0
1,429,313 + +1.2
1,429,314 - -0.3
1,429,314 - -0.1
1,429,316 + +0.1
1,429,316 + -0.1
1,429,317 - -1.3
1,429,350 + +0.1
1,429,473 - BNILDI_07165 0.68 -0.3
1,429,504 - BNILDI_07165 0.85 +0.9
1,429,518 + -1.4
1,429,519 - -0.6
1,429,557 - +2.0
1,429,557 - -0.4
1,429,561 - +0.4
1,429,598 - +0.8
1,429,607 + +0.6
1,429,641 - fabG BNILDI_07170 0.12 +0.2

Or see this region's nucleotide sequence