Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfK and yjfL are separated by 17 nucleotides yjfL and yjfM are separated by 9 nucleotides yjfM and yjfC are separated by 2 nucleotides
BNILDI_07025: yjfK - Uncharacterized protein YjfK, at 1,406,045 to 1,406,704
yjfK
BNILDI_07030: yjfL - UPF0719 inner membrane protein YjfL, at 1,406,722 to 1,407,120
yjfL
BNILDI_07035: yjfM - Uncharacterized protein YjfM, at 1,407,130 to 1,407,768
yjfM
BNILDI_07040: yjfC - Putative acid--amine ligase YjfC, at 1,407,771 to 1,408,934
yjfC
Position (kb) 1407
1408 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1406.204 kb on - strand, within yjfK at 1406.262 kb on - strand, within yjfK at 1406.293 kb on + strand, within yjfK at 1406.424 kb on + strand, within yjfK at 1406.424 kb on + strand, within yjfK at 1406.493 kb on - strand, within yjfK at 1406.581 kb on + strand, within yjfK at 1406.621 kb on - strand, within yjfK at 1406.646 kb on + strand at 1406.693 kb on - strand at 1407.008 kb on - strand, within yjfL at 1407.108 kb on + strand at 1407.109 kb on - strand at 1407.118 kb on + strand at 1407.445 kb on - strand, within yjfM at 1407.445 kb on - strand, within yjfM at 1407.484 kb on + strand, within yjfM at 1407.485 kb on - strand, within yjfM at 1407.488 kb on - strand, within yjfM at 1407.579 kb on + strand, within yjfM at 1407.580 kb on - strand, within yjfM at 1407.842 kb on + strand at 1407.842 kb on + strand at 1408.018 kb on - strand, within yjfC at 1408.146 kb on + strand, within yjfC at 1408.158 kb on + strand, within yjfC at 1408.260 kb on - strand, within yjfC at 1408.269 kb on + strand, within yjfC at 1408.270 kb on - strand, within yjfC at 1408.335 kb on + strand, within yjfC at 1408.383 kb on + strand, within yjfC at 1408.383 kb on + strand, within yjfC at 1408.418 kb on - strand, within yjfC at 1408.457 kb on + strand, within yjfC at 1408.560 kb on - strand, within yjfC at 1408.563 kb on - strand, within yjfC at 1408.571 kb on - strand, within yjfC at 1408.665 kb on + strand, within yjfC at 1408.665 kb on + strand, within yjfC at 1408.665 kb on + strand, within yjfC at 1408.666 kb on - strand, within yjfC at 1408.666 kb on - strand, within yjfC at 1408.674 kb on - strand, within yjfC at 1408.755 kb on + strand, within yjfC at 1408.756 kb on - strand, within yjfC
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,406,204 - yjfK BNILDI_07025 0.24 +0.7 1,406,262 - yjfK BNILDI_07025 0.33 -0.5 1,406,293 + yjfK BNILDI_07025 0.38 -0.7 1,406,424 + yjfK BNILDI_07025 0.57 -0.5 1,406,424 + yjfK BNILDI_07025 0.57 +0.9 1,406,493 - yjfK BNILDI_07025 0.68 +0.6 1,406,581 + yjfK BNILDI_07025 0.81 +0.5 1,406,621 - yjfK BNILDI_07025 0.87 -0.1 1,406,646 + -1.9 1,406,693 - +0.3 1,407,008 - yjfL BNILDI_07030 0.72 +0.8 1,407,108 + +0.2 1,407,109 - +1.1 1,407,118 + -0.5 1,407,445 - yjfM BNILDI_07035 0.49 +0.2 1,407,445 - yjfM BNILDI_07035 0.49 -0.4 1,407,484 + yjfM BNILDI_07035 0.55 -0.1 1,407,485 - yjfM BNILDI_07035 0.56 -0.4 1,407,488 - yjfM BNILDI_07035 0.56 +0.5 1,407,579 + yjfM BNILDI_07035 0.70 -1.1 1,407,580 - yjfM BNILDI_07035 0.70 -0.3 1,407,842 + +0.4 1,407,842 + +0.1 1,408,018 - yjfC BNILDI_07040 0.21 +0.2 1,408,146 + yjfC BNILDI_07040 0.32 +1.1 1,408,158 + yjfC BNILDI_07040 0.33 +1.2 1,408,260 - yjfC BNILDI_07040 0.42 +0.3 1,408,269 + yjfC BNILDI_07040 0.43 -0.7 1,408,270 - yjfC BNILDI_07040 0.43 -0.3 1,408,335 + yjfC BNILDI_07040 0.48 +0.4 1,408,383 + yjfC BNILDI_07040 0.53 +0.3 1,408,383 + yjfC BNILDI_07040 0.53 -0.0 1,408,418 - yjfC BNILDI_07040 0.56 +0.5 1,408,457 + yjfC BNILDI_07040 0.59 -0.1 1,408,560 - yjfC BNILDI_07040 0.68 +1.8 1,408,563 - yjfC BNILDI_07040 0.68 +0.0 1,408,571 - yjfC BNILDI_07040 0.69 +1.7 1,408,665 + yjfC BNILDI_07040 0.77 -0.4 1,408,665 + yjfC BNILDI_07040 0.77 -0.2 1,408,665 + yjfC BNILDI_07040 0.77 +0.5 1,408,666 - yjfC BNILDI_07040 0.77 +1.0 1,408,666 - yjfC BNILDI_07040 0.77 +0.2 1,408,674 - yjfC BNILDI_07040 0.78 -4.8 1,408,755 + yjfC BNILDI_07040 0.85 +0.9 1,408,756 - yjfC BNILDI_07040 0.85 +0.5
Or see this region's nucleotide sequence