Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeC and soxS_A12S are separated by 2 nucleotides soxS_A12S and soxR are separated by 85 nucleotides
BNILDI_06395: pdeC - c-di-GMP phosphodiesterase PdeC, at 1,277,174 to 1,278,760
pdeC
BNILDI_06400: soxS_A12S - regulatory protein SoxS, at 1,278,763 to 1,279,086
_A12S
BNILDI_06405: soxR - redox-sensitive transcriptional activator SoxR, at 1,279,172 to 1,279,636
soxR
Position (kb) 1278
1279
1280 Strain fitness (log2 ratio) -2
-1
0
1 at 1278.033 kb on - strand, within pdeC at 1278.175 kb on - strand, within pdeC at 1278.460 kb on + strand, within pdeC at 1278.842 kb on + strand, within soxS_A12S at 1278.842 kb on + strand, within soxS_A12S at 1278.842 kb on + strand, within soxS_A12S at 1278.843 kb on - strand, within soxS_A12S at 1278.843 kb on - strand, within soxS_A12S at 1278.843 kb on - strand, within soxS_A12S at 1279.009 kb on + strand, within soxS_A12S at 1279.020 kb on + strand, within soxS_A12S at 1279.056 kb on + strand at 1279.069 kb on - strand at 1279.171 kb on + strand at 1279.196 kb on - strand at 1279.271 kb on - strand, within soxR at 1279.271 kb on - strand, within soxR at 1279.366 kb on + strand, within soxR at 1279.423 kb on + strand, within soxR at 1279.423 kb on + strand, within soxR at 1279.424 kb on - strand, within soxR at 1279.428 kb on + strand, within soxR at 1279.429 kb on - strand, within soxR at 1279.429 kb on - strand, within soxR at 1279.429 kb on - strand, within soxR at 1279.493 kb on - strand, within soxR at 1279.493 kb on - strand, within soxR at 1279.493 kb on - strand, within soxR at 1279.497 kb on + strand, within soxR at 1279.497 kb on + strand, within soxR at 1279.498 kb on - strand, within soxR at 1279.498 kb on - strand, within soxR at 1279.501 kb on - strand, within soxR at 1279.528 kb on + strand, within soxR at 1279.529 kb on - strand, within soxR at 1279.588 kb on - strand, within soxR at 1279.635 kb on - strand at 1279.655 kb on + strand at 1279.656 kb on - strand at 1279.656 kb on - strand at 1279.697 kb on + strand at 1279.698 kb on - strand at 1279.774 kb on + strand at 1279.780 kb on + strand at 1279.823 kb on - strand at 1279.831 kb on + strand at 1279.877 kb on + strand at 1279.878 kb on - strand at 1279.878 kb on - strand at 1279.959 kb on - strand at 1280.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,278,033 - pdeC BNILDI_06395 0.54 -2.0 1,278,175 - pdeC BNILDI_06395 0.63 +1.0 1,278,460 + pdeC BNILDI_06395 0.81 -0.6 1,278,842 + soxS_A12S BNILDI_06400 0.24 +0.1 1,278,842 + soxS_A12S BNILDI_06400 0.24 +0.6 1,278,842 + soxS_A12S BNILDI_06400 0.24 -0.3 1,278,843 - soxS_A12S BNILDI_06400 0.25 +0.5 1,278,843 - soxS_A12S BNILDI_06400 0.25 -0.1 1,278,843 - soxS_A12S BNILDI_06400 0.25 +0.1 1,279,009 + soxS_A12S BNILDI_06400 0.76 +0.8 1,279,020 + soxS_A12S BNILDI_06400 0.79 +0.1 1,279,056 + -0.1 1,279,069 - -1.0 1,279,171 + +0.1 1,279,196 - -0.8 1,279,271 - soxR BNILDI_06405 0.21 +0.7 1,279,271 - soxR BNILDI_06405 0.21 +0.1 1,279,366 + soxR BNILDI_06405 0.42 +0.6 1,279,423 + soxR BNILDI_06405 0.54 +0.9 1,279,423 + soxR BNILDI_06405 0.54 +0.2 1,279,424 - soxR BNILDI_06405 0.54 -0.4 1,279,428 + soxR BNILDI_06405 0.55 +0.1 1,279,429 - soxR BNILDI_06405 0.55 +0.7 1,279,429 - soxR BNILDI_06405 0.55 +1.1 1,279,429 - soxR BNILDI_06405 0.55 -0.0 1,279,493 - soxR BNILDI_06405 0.69 +0.5 1,279,493 - soxR BNILDI_06405 0.69 +1.0 1,279,493 - soxR BNILDI_06405 0.69 +0.1 1,279,497 + soxR BNILDI_06405 0.70 +0.8 1,279,497 + soxR BNILDI_06405 0.70 +0.9 1,279,498 - soxR BNILDI_06405 0.70 +1.1 1,279,498 - soxR BNILDI_06405 0.70 -0.6 1,279,501 - soxR BNILDI_06405 0.71 -0.2 1,279,528 + soxR BNILDI_06405 0.77 -0.3 1,279,529 - soxR BNILDI_06405 0.77 -1.2 1,279,588 - soxR BNILDI_06405 0.89 +0.1 1,279,635 - +0.6 1,279,655 + -0.5 1,279,656 - -1.0 1,279,656 - -0.3 1,279,697 + +0.7 1,279,698 - +0.8 1,279,774 + -0.1 1,279,780 + -0.1 1,279,823 - +0.1 1,279,831 + -0.3 1,279,877 + -0.7 1,279,878 - +0.2 1,279,878 - -0.7 1,279,959 - +0.1 1,280,043 + +0.1
Or see this region's nucleotide sequence