Strain Fitness in Escherichia coli ECRC62 around BNILDI_06295

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntplsB and dgkA are separated by 170 nucleotidesdgkA and lexA are separated by 109 nucleotideslexA and dinF are separated by 72 nucleotides BNILDI_06290: plsB - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 1,255,719 to 1,258,142 plsB BNILDI_06295: dgkA - diacylglycerol kinase, at 1,258,313 to 1,258,681 dgkA BNILDI_06300: lexA - transcriptional repressor LexA, at 1,258,791 to 1,259,399 lexA BNILDI_06305: dinF - MATE family efflux transporter DinF, at 1,259,472 to 1,260,797 dinF Position (kb) 1258 1259Strain fitness (log2 ratio) -2 -1 0 1at 1258.266 kb on + strandat 1258.273 kb on - strandat 1258.281 kb on - strandat 1258.292 kb on + strandat 1258.600 kb on + strand, within dgkAat 1258.712 kb on - strandat 1258.712 kb on - strandat 1258.750 kb on - strandat 1258.751 kb on + strandat 1258.753 kb on + strandat 1258.753 kb on + strandat 1258.774 kb on + strandat 1258.774 kb on + strandat 1258.774 kb on + strandat 1259.397 kb on + strandat 1259.402 kb on + strandat 1259.402 kb on + strandat 1259.403 kb on - strandat 1259.403 kb on - strandat 1259.602 kb on - strandat 1259.648 kb on + strand, within dinFat 1259.649 kb on - strand, within dinF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,258,266 + -0.4
1,258,273 - +0.3
1,258,281 - -1.9
1,258,292 + +0.3
1,258,600 + dgkA BNILDI_06295 0.78 -1.5
1,258,712 - -0.3
1,258,712 - +1.6
1,258,750 - -1.2
1,258,751 + +0.1
1,258,753 + +0.9
1,258,753 + -0.1
1,258,774 + +0.6
1,258,774 + -0.4
1,258,774 + -0.2
1,259,397 + -0.1
1,259,402 + +0.1
1,259,402 + +0.0
1,259,403 - +0.5
1,259,403 - -1.7
1,259,602 - -0.7
1,259,648 + dinF BNILDI_06305 0.13 -1.5
1,259,649 - dinF BNILDI_06305 0.13 -0.9

Or see this region's nucleotide sequence