Strain Fitness in Escherichia coli ECRC62 around BNILDI_06065

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurD and purH are separated by 11 nucleotidespurH and 16S_rrna are separated by 614 nucleotides BNILDI_06060: purD - Phosphoribosylamine--glycine ligase, at 1,204,256 to 1,205,545 purD BNILDI_06065: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,205,557 to 1,207,146 purH BNILDI_06070: 16S_rrna - 16S ribosomal RNA, at 1,207,761 to 1,209,302 _rrna Position (kb) 1205 1206 1207 1208Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1204.648 kb on + strand, within purDat 1204.649 kb on - strand, within purDat 1204.685 kb on - strand, within purDat 1204.735 kb on - strand, within purDat 1204.749 kb on + strand, within purDat 1204.750 kb on - strand, within purDat 1204.795 kb on + strand, within purDat 1204.796 kb on - strand, within purDat 1204.796 kb on - strand, within purDat 1204.832 kb on + strand, within purDat 1204.849 kb on - strand, within purDat 1204.849 kb on - strand, within purDat 1204.879 kb on + strand, within purDat 1205.035 kb on + strand, within purDat 1205.114 kb on - strand, within purDat 1205.163 kb on - strand, within purDat 1205.200 kb on + strand, within purDat 1205.224 kb on + strand, within purDat 1205.537 kb on + strandat 1205.537 kb on + strandat 1205.538 kb on - strandat 1205.547 kb on + strandat 1205.547 kb on + strandat 1205.548 kb on - strandat 1205.558 kb on + strandat 1205.640 kb on + strandat 1205.770 kb on - strand, within purHat 1206.062 kb on - strand, within purHat 1206.118 kb on - strand, within purHat 1206.249 kb on + strand, within purHat 1206.361 kb on - strand, within purHat 1206.363 kb on - strand, within purHat 1206.427 kb on + strand, within purHat 1206.428 kb on - strand, within purHat 1206.428 kb on - strand, within purHat 1206.428 kb on - strand, within purHat 1206.431 kb on + strand, within purHat 1206.431 kb on + strand, within purHat 1206.432 kb on - strand, within purHat 1206.432 kb on - strand, within purHat 1206.545 kb on + strand, within purHat 1206.570 kb on - strand, within purHat 1206.724 kb on - strand, within purHat 1206.923 kb on - strand, within purHat 1207.149 kb on + strandat 1207.149 kb on + strandat 1207.150 kb on - strandat 1207.150 kb on - strandat 1207.171 kb on + strandat 1207.171 kb on + strandat 1207.171 kb on + strandat 1207.172 kb on - strandat 1207.235 kb on - strandat 1207.344 kb on + strandat 1207.345 kb on - strandat 1207.375 kb on - strandat 1207.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,204,648 + purD BNILDI_06060 0.30 -3.2
1,204,649 - purD BNILDI_06060 0.30 -4.0
1,204,685 - purD BNILDI_06060 0.33 -2.4
1,204,735 - purD BNILDI_06060 0.37 -1.4
1,204,749 + purD BNILDI_06060 0.38 -3.0
1,204,750 - purD BNILDI_06060 0.38 -3.1
1,204,795 + purD BNILDI_06060 0.42 -1.4
1,204,796 - purD BNILDI_06060 0.42 -3.4
1,204,796 - purD BNILDI_06060 0.42 -1.4
1,204,832 + purD BNILDI_06060 0.45 -4.1
1,204,849 - purD BNILDI_06060 0.46 -2.9
1,204,849 - purD BNILDI_06060 0.46 -2.6
1,204,879 + purD BNILDI_06060 0.48 -4.0
1,205,035 + purD BNILDI_06060 0.60 +0.2
1,205,114 - purD BNILDI_06060 0.67 -3.3
1,205,163 - purD BNILDI_06060 0.70 -3.9
1,205,200 + purD BNILDI_06060 0.73 -2.2
1,205,224 + purD BNILDI_06060 0.75 -0.1
1,205,537 + -3.0
1,205,537 + -3.9
1,205,538 - -4.4
1,205,547 + -4.3
1,205,547 + -2.7
1,205,548 - -2.3
1,205,558 + -0.7
1,205,640 + -2.5
1,205,770 - purH BNILDI_06065 0.13 -4.5
1,206,062 - purH BNILDI_06065 0.32 -4.9
1,206,118 - purH BNILDI_06065 0.35 -1.6
1,206,249 + purH BNILDI_06065 0.44 -0.5
1,206,361 - purH BNILDI_06065 0.51 -3.1
1,206,363 - purH BNILDI_06065 0.51 -2.8
1,206,427 + purH BNILDI_06065 0.55 -3.7
1,206,428 - purH BNILDI_06065 0.55 -4.8
1,206,428 - purH BNILDI_06065 0.55 -3.1
1,206,428 - purH BNILDI_06065 0.55 -4.3
1,206,431 + purH BNILDI_06065 0.55 -1.7
1,206,431 + purH BNILDI_06065 0.55 -1.7
1,206,432 - purH BNILDI_06065 0.55 -3.9
1,206,432 - purH BNILDI_06065 0.55 -3.4
1,206,545 + purH BNILDI_06065 0.62 -2.9
1,206,570 - purH BNILDI_06065 0.64 -1.2
1,206,724 - purH BNILDI_06065 0.73 -3.9
1,206,923 - purH BNILDI_06065 0.86 -2.2
1,207,149 + -0.2
1,207,149 + -1.1
1,207,150 - -1.2
1,207,150 - -0.6
1,207,171 + -2.4
1,207,171 + -1.1
1,207,171 + -0.2
1,207,172 - -1.7
1,207,235 - +0.0
1,207,344 + -0.1
1,207,345 - -1.4
1,207,375 - -3.1
1,207,384 + -1.0

Or see this region's nucleotide sequence