Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purD and purH are separated by 11 nucleotides purH and 16S_rrna are separated by 614 nucleotides
BNILDI_06060: purD - Phosphoribosylamine--glycine ligase, at 1,204,256 to 1,205,545
purD
BNILDI_06065: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,205,557 to 1,207,146
purH
BNILDI_06070: 16S_rrna - 16S ribosomal RNA, at 1,207,761 to 1,209,302
_rrna
Position (kb)
1205
1206
1207
1208 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1204.648 kb on + strand, within purD at 1204.649 kb on - strand, within purD at 1204.685 kb on - strand, within purD at 1204.735 kb on - strand, within purD at 1204.749 kb on + strand, within purD at 1204.750 kb on - strand, within purD at 1204.795 kb on + strand, within purD at 1204.796 kb on - strand, within purD at 1204.796 kb on - strand, within purD at 1204.832 kb on + strand, within purD at 1204.849 kb on - strand, within purD at 1204.849 kb on - strand, within purD at 1204.879 kb on + strand, within purD at 1205.035 kb on + strand, within purD at 1205.114 kb on - strand, within purD at 1205.163 kb on - strand, within purD at 1205.200 kb on + strand, within purD at 1205.224 kb on + strand, within purD at 1205.537 kb on + strand at 1205.537 kb on + strand at 1205.538 kb on - strand at 1205.547 kb on + strand at 1205.547 kb on + strand at 1205.548 kb on - strand at 1205.558 kb on + strand at 1205.640 kb on + strand at 1205.770 kb on - strand, within purH at 1206.062 kb on - strand, within purH at 1206.118 kb on - strand, within purH at 1206.249 kb on + strand, within purH at 1206.361 kb on - strand, within purH at 1206.363 kb on - strand, within purH at 1206.427 kb on + strand, within purH at 1206.428 kb on - strand, within purH at 1206.428 kb on - strand, within purH at 1206.428 kb on - strand, within purH at 1206.431 kb on + strand, within purH at 1206.431 kb on + strand, within purH at 1206.432 kb on - strand, within purH at 1206.432 kb on - strand, within purH at 1206.545 kb on + strand, within purH at 1206.570 kb on - strand, within purH at 1206.724 kb on - strand, within purH at 1206.923 kb on - strand, within purH at 1207.149 kb on + strand at 1207.149 kb on + strand at 1207.150 kb on - strand at 1207.150 kb on - strand at 1207.171 kb on + strand at 1207.171 kb on + strand at 1207.171 kb on + strand at 1207.172 kb on - strand at 1207.235 kb on - strand at 1207.344 kb on + strand at 1207.345 kb on - strand at 1207.375 kb on - strand at 1207.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,204,648 + purD BNILDI_06060 0.30 -3.2 1,204,649 - purD BNILDI_06060 0.30 -4.0 1,204,685 - purD BNILDI_06060 0.33 -2.4 1,204,735 - purD BNILDI_06060 0.37 -1.4 1,204,749 + purD BNILDI_06060 0.38 -3.0 1,204,750 - purD BNILDI_06060 0.38 -3.1 1,204,795 + purD BNILDI_06060 0.42 -1.4 1,204,796 - purD BNILDI_06060 0.42 -3.4 1,204,796 - purD BNILDI_06060 0.42 -1.4 1,204,832 + purD BNILDI_06060 0.45 -4.1 1,204,849 - purD BNILDI_06060 0.46 -2.9 1,204,849 - purD BNILDI_06060 0.46 -2.6 1,204,879 + purD BNILDI_06060 0.48 -4.0 1,205,035 + purD BNILDI_06060 0.60 +0.2 1,205,114 - purD BNILDI_06060 0.67 -3.3 1,205,163 - purD BNILDI_06060 0.70 -3.9 1,205,200 + purD BNILDI_06060 0.73 -2.2 1,205,224 + purD BNILDI_06060 0.75 -0.1 1,205,537 + -3.0 1,205,537 + -3.9 1,205,538 - -4.4 1,205,547 + -4.3 1,205,547 + -2.7 1,205,548 - -2.3 1,205,558 + -0.7 1,205,640 + -2.5 1,205,770 - purH BNILDI_06065 0.13 -4.5 1,206,062 - purH BNILDI_06065 0.32 -4.9 1,206,118 - purH BNILDI_06065 0.35 -1.6 1,206,249 + purH BNILDI_06065 0.44 -0.5 1,206,361 - purH BNILDI_06065 0.51 -3.1 1,206,363 - purH BNILDI_06065 0.51 -2.8 1,206,427 + purH BNILDI_06065 0.55 -3.7 1,206,428 - purH BNILDI_06065 0.55 -4.8 1,206,428 - purH BNILDI_06065 0.55 -3.1 1,206,428 - purH BNILDI_06065 0.55 -4.3 1,206,431 + purH BNILDI_06065 0.55 -1.7 1,206,431 + purH BNILDI_06065 0.55 -1.7 1,206,432 - purH BNILDI_06065 0.55 -3.9 1,206,432 - purH BNILDI_06065 0.55 -3.4 1,206,545 + purH BNILDI_06065 0.62 -2.9 1,206,570 - purH BNILDI_06065 0.64 -1.2 1,206,724 - purH BNILDI_06065 0.73 -3.9 1,206,923 - purH BNILDI_06065 0.86 -2.2 1,207,149 + -0.2 1,207,149 + -1.1 1,207,150 - -1.2 1,207,150 - -0.6 1,207,171 + -2.4 1,207,171 + -1.1 1,207,171 + -0.2 1,207,172 - -1.7 1,207,235 - +0.0 1,207,344 + -0.1 1,207,345 - -1.4 1,207,375 - -3.1 1,207,384 + -1.0
Or see this region's nucleotide sequence