Strain Fitness in Escherichia coli ECRC62 around BNILDI_06005

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,192,903	+	thiF	BNILDI_05995	0.59	-0.1
1,192,904	-	thiF	BNILDI_05995	0.59	-0.3
1,192,904	-	thiF	BNILDI_05995	0.59	-3.1
1,192,904	-	thiF	BNILDI_05995	0.59	-0.1
1,192,904	-	thiF	BNILDI_05995	0.59	-0.6
1,193,075	+	thiF	BNILDI_05995	0.82	-1.5
1,193,075	+	thiF	BNILDI_05995	0.82	-1.0
1,193,075	+	thiF	BNILDI_05995	0.82	-0.8
1,193,076	-	thiF	BNILDI_05995	0.82	+0.7
1,193,184	+				-1.3
1,193,464	+	thiE	BNILDI_06000	0.41	+0.3
1,193,465	-	thiE	BNILDI_06000	0.41	+0.1
1,193,466	+	thiE	BNILDI_06000	0.41	+0.5
1,193,466	+	thiE	BNILDI_06000	0.41	+2.4
1,193,466	+	thiE	BNILDI_06000	0.41	-0.6
1,193,467	-	thiE	BNILDI_06000	0.41	-0.3
1,193,467	-	thiE	BNILDI_06000	0.41	-2.6
1,193,467	-	thiE	BNILDI_06000	0.41	-0.4
1,193,467	-	thiE	BNILDI_06000	0.41	-0.8
1,193,598	+	thiE	BNILDI_06000	0.62	+0.2
1,193,599	-	thiE	BNILDI_06000	0.62	-0.9
1,193,599	-	thiE	BNILDI_06000	0.62	-0.8
1,193,638	+	thiE	BNILDI_06000	0.68	-0.3
1,193,727	-	thiE	BNILDI_06000	0.82	-1.3
1,193,737	+	thiE	BNILDI_06000	0.84	-0.2
1,193,738	-	thiE	BNILDI_06000	0.84	-2.3
1,193,738	-	thiE	BNILDI_06000	0.84	-0.2
1,193,741	+	thiE	BNILDI_06000	0.84	+0.1
1,193,742	-	thiE	BNILDI_06000	0.85	+1.2
1,193,774	+	thiE	BNILDI_06000	0.90	-0.8
1,193,775	-	thiE	BNILDI_06000	0.90	-1.1
1,193,775	-	thiE	BNILDI_06000	0.90	-0.8
1,193,835	+				-0.9
1,193,836	-				-3.2
1,193,920	-				-1.2
1,193,920	-				+0.6
1,193,920	-				-1.6
1,194,075	+	thiC	BNILDI_06005	0.12	+0.1
1,194,183	+	thiC	BNILDI_06005	0.18	+1.3
1,194,183	+	thiC	BNILDI_06005	0.18	-1.8
1,194,185	+	thiC	BNILDI_06005	0.18	-0.6
1,194,185	+	thiC	BNILDI_06005	0.18	-0.3
1,194,185	+	thiC	BNILDI_06005	0.18	+1.5
1,194,186	-	thiC	BNILDI_06005	0.18	-1.0
1,194,193	-	thiC	BNILDI_06005	0.19	-0.3
1,194,205	-	thiC	BNILDI_06005	0.19	-1.2
1,194,216	+	thiC	BNILDI_06005	0.20	-1.6
1,194,217	-	thiC	BNILDI_06005	0.20	-0.8
1,194,220	-	thiC	BNILDI_06005	0.20	-0.5
1,194,251	+	thiC	BNILDI_06005	0.22	-0.1
1,194,318	-	thiC	BNILDI_06005	0.25	-0.6
1,194,337	-	thiC	BNILDI_06005	0.26	+0.1
1,194,382	+	thiC	BNILDI_06005	0.29	+0.5
1,194,382	+	thiC	BNILDI_06005	0.29	+1.5
1,194,459	-	thiC	BNILDI_06005	0.33	-1.5
1,194,493	-	thiC	BNILDI_06005	0.34	-0.5
1,194,493	-	thiC	BNILDI_06005	0.34	-0.3
1,194,534	+	thiC	BNILDI_06005	0.37	-1.5
1,194,535	-	thiC	BNILDI_06005	0.37	+0.2
1,194,535	-	thiC	BNILDI_06005	0.37	-1.1
1,194,579	-	thiC	BNILDI_06005	0.39	-1.4
1,194,716	+	thiC	BNILDI_06005	0.46	-0.4
1,194,716	+	thiC	BNILDI_06005	0.46	-1.4
1,194,727	+	thiC	BNILDI_06005	0.47	+0.1
1,194,727	+	thiC	BNILDI_06005	0.47	-1.3
1,194,750	-	thiC	BNILDI_06005	0.48	-3.7
1,194,805	-	thiC	BNILDI_06005	0.51	-0.9
1,194,845	+	thiC	BNILDI_06005	0.53	-1.2
1,194,858	+	thiC	BNILDI_06005	0.54	-1.1
1,194,909	+	thiC	BNILDI_06005	0.56	-1.0
1,194,910	-	thiC	BNILDI_06005	0.56	+0.7
1,194,910	-	thiC	BNILDI_06005	0.56	-0.5
1,194,910	-	thiC	BNILDI_06005	0.56	-0.6
1,194,965	-	thiC	BNILDI_06005	0.59	-1.8
1,195,081	-	thiC	BNILDI_06005	0.66	-2.8
1,195,192	+	thiC	BNILDI_06005	0.71	+0.1
1,195,328	-	thiC	BNILDI_06005	0.79	+0.2
1,195,330	+	thiC	BNILDI_06005	0.79	-0.7
1,195,330	+	thiC	BNILDI_06005	0.79	-2.4
1,195,330	+	thiC	BNILDI_06005	0.79	-0.5
1,195,331	-	thiC	BNILDI_06005	0.79	-0.4
1,195,331	-	thiC	BNILDI_06005	0.79	+0.6
1,195,331	-	thiC	BNILDI_06005	0.79	+0.5
1,195,331	-	thiC	BNILDI_06005	0.79	-0.5
1,195,632	+				-0.6
1,195,634	+				-1.8
1,195,634	+				-2.0
1,195,635	-				-1.6
1,195,681	-				-0.3
1,195,734	+				+0.2
1,195,735	-				-0.1
1,195,735	-				-0.7
1,195,735	-				-1.0
1,195,822	+				-0.9
1,195,823	-				-1.1
1,195,823	-				-0.9
1,195,844	+				+0.1
1,195,844	+				-1.4
1,195,895	-				-0.3
1,196,209	+	rsd	BNILDI_06010	0.51	+1.0
1,196,226	+	rsd	BNILDI_06010	0.54	-0.3
1,196,253	+	rsd	BNILDI_06010	0.60	+0.4
1,196,253	+	rsd	BNILDI_06010	0.60	+0.2
1,196,254	-	rsd	BNILDI_06010	0.60	+0.3
1,196,254	-	rsd	BNILDI_06010	0.60	+0.1
1,196,307	+	rsd	BNILDI_06010	0.71	-0.0
1,196,308	-	rsd	BNILDI_06010	0.71	+0.1
1,196,346	+	rsd	BNILDI_06010	0.79	+1.4
1,196,347	-	rsd	BNILDI_06010	0.80	-0.8
1,196,365	+	rsd	BNILDI_06010	0.83	+0.5
1,196,365	+	rsd	BNILDI_06010	0.83	+1.4
1,196,365	+	rsd	BNILDI_06010	0.83	+1.0
1,196,369	+	rsd	BNILDI_06010	0.84	+1.0
1,196,369	+	rsd	BNILDI_06010	0.84	-2.2
1,196,369	+	rsd	BNILDI_06010	0.84	-1.9
1,196,369	+	rsd	BNILDI_06010	0.84	+0.0
1,196,370	-	rsd	BNILDI_06010	0.84	+1.0
1,196,370	-	rsd	BNILDI_06010	0.84	+0.1
1,196,370	-	rsd	BNILDI_06010	0.84	-0.2
1,196,370	-	rsd	BNILDI_06010	0.84	+1.0
1,196,375	+	rsd	BNILDI_06010	0.86	+0.2
1,196,398	+				-0.4
1,196,399	-				-0.4
1,196,526	-				+0.3
1,196,537	+				+0.5
1,196,546	+				+0.2
1,196,549	-				-0.1
1,196,599	+				-1.7
1,196,707	+	nudC	BNILDI_06015	0.22	+1.1
1,196,707	+	nudC	BNILDI_06015	0.22	-2.6
1,196,708	-	nudC	BNILDI_06015	0.22	+1.5