Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihM and yihN are separated by 101 nucleotides yihN and ompL are separated by 90 nucleotides ompL and yihO are separated by 67 nucleotides
BNILDI_05325: yihM - Uncharacterized protein YihM, at 1,052,669 to 1,053,649
yihM
BNILDI_05330: yihN - Inner membrane protein YihN, at 1,053,751 to 1,055,016
yihN
BNILDI_05335: ompL - porin OmpL, at 1,055,107 to 1,055,799
ompL
BNILDI_05340: yihO - Putative sulfoquinovose importer, at 1,055,867 to 1,057,270
yihO
Position (kb) 1053
1054
1055
1056 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1052.924 kb on - strand, within yihM at 1053.032 kb on - strand, within yihM at 1053.045 kb on + strand, within yihM at 1053.046 kb on - strand, within yihM at 1053.078 kb on + strand, within yihM at 1053.266 kb on - strand, within yihM at 1053.326 kb on - strand, within yihM at 1053.382 kb on + strand, within yihM at 1053.383 kb on - strand, within yihM at 1053.383 kb on - strand, within yihM at 1053.385 kb on - strand, within yihM at 1053.443 kb on + strand, within yihM at 1053.447 kb on - strand, within yihM at 1053.557 kb on - strand at 1053.578 kb on - strand at 1053.606 kb on + strand at 1053.750 kb on + strand at 1053.894 kb on + strand, within yihN at 1053.895 kb on - strand, within yihN at 1054.074 kb on + strand, within yihN at 1054.300 kb on - strand, within yihN at 1054.384 kb on - strand, within yihN at 1054.495 kb on + strand, within yihN at 1054.496 kb on - strand, within yihN at 1054.496 kb on - strand, within yihN at 1054.496 kb on - strand, within yihN at 1054.499 kb on + strand, within yihN at 1054.612 kb on - strand, within yihN at 1054.656 kb on - strand, within yihN at 1054.656 kb on - strand, within yihN at 1054.666 kb on - strand, within yihN at 1054.711 kb on - strand, within yihN at 1054.711 kb on - strand, within yihN at 1054.711 kb on - strand, within yihN at 1054.819 kb on - strand, within yihN at 1054.824 kb on + strand, within yihN at 1054.986 kb on + strand at 1055.117 kb on + strand at 1055.170 kb on - strand at 1055.313 kb on + strand, within ompL at 1055.315 kb on + strand, within ompL at 1055.709 kb on + strand, within ompL at 1055.711 kb on + strand, within ompL at 1055.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,052,924 - yihM BNILDI_05325 0.26 -2.3 1,053,032 - yihM BNILDI_05325 0.37 +0.3 1,053,045 + yihM BNILDI_05325 0.38 +0.6 1,053,046 - yihM BNILDI_05325 0.38 -2.5 1,053,078 + yihM BNILDI_05325 0.42 +0.0 1,053,266 - yihM BNILDI_05325 0.61 -0.8 1,053,326 - yihM BNILDI_05325 0.67 +0.1 1,053,382 + yihM BNILDI_05325 0.73 -0.1 1,053,383 - yihM BNILDI_05325 0.73 +0.1 1,053,383 - yihM BNILDI_05325 0.73 -0.2 1,053,385 - yihM BNILDI_05325 0.73 -0.4 1,053,443 + yihM BNILDI_05325 0.79 +1.3 1,053,447 - yihM BNILDI_05325 0.79 +1.0 1,053,557 - -0.7 1,053,578 - -2.7 1,053,606 + -0.1 1,053,750 + -0.5 1,053,894 + yihN BNILDI_05330 0.11 -0.1 1,053,895 - yihN BNILDI_05330 0.11 +0.5 1,054,074 + yihN BNILDI_05330 0.26 +0.4 1,054,300 - yihN BNILDI_05330 0.43 -0.2 1,054,384 - yihN BNILDI_05330 0.50 -0.9 1,054,495 + yihN BNILDI_05330 0.59 -0.2 1,054,496 - yihN BNILDI_05330 0.59 -0.3 1,054,496 - yihN BNILDI_05330 0.59 +0.7 1,054,496 - yihN BNILDI_05330 0.59 +0.0 1,054,499 + yihN BNILDI_05330 0.59 +1.2 1,054,612 - yihN BNILDI_05330 0.68 -0.8 1,054,656 - yihN BNILDI_05330 0.71 +0.2 1,054,656 - yihN BNILDI_05330 0.71 -0.6 1,054,666 - yihN BNILDI_05330 0.72 +0.2 1,054,711 - yihN BNILDI_05330 0.76 +0.9 1,054,711 - yihN BNILDI_05330 0.76 +0.4 1,054,711 - yihN BNILDI_05330 0.76 +0.7 1,054,819 - yihN BNILDI_05330 0.84 +0.8 1,054,824 + yihN BNILDI_05330 0.85 -0.1 1,054,986 + +0.2 1,055,117 + -0.1 1,055,170 - -0.1 1,055,313 + ompL BNILDI_05335 0.30 -0.2 1,055,315 + ompL BNILDI_05335 0.30 +0.0 1,055,709 + ompL BNILDI_05335 0.87 +0.8 1,055,711 + ompL BNILDI_05335 0.87 +0.3 1,055,803 - +2.2
Or see this region's nucleotide sequence