Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ilvY and ilvC are separated by 149 nucleotides ilvC and ppiC are separated by 86 nucleotides ppiC and yifN are separated by 198 nucleotides
BNILDI_04760: ilvY - HTH-type transcriptional activator IlvY, at 943,856 to 944,746
ilvY
BNILDI_04765: ilvC - ketol-acid reductoisomerase, at 944,896 to 946,371
ilvC
BNILDI_04770: ppiC - peptidylprolyl isomerase PpiC, at 946,458 to 946,739
ppiC
BNILDI_04775: yifN - Putative uncharacterized protein YifN, at 946,938 to 947,387
yifN
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 944.089 kb on - strand, within ilvY at 944.371 kb on + strand, within ilvY at 944.374 kb on + strand, within ilvY at 944.374 kb on + strand, within ilvY at 944.375 kb on - strand, within ilvY at 944.375 kb on - strand, within ilvY at 944.375 kb on - strand, within ilvY at 944.465 kb on - strand, within ilvY at 944.469 kb on - strand, within ilvY at 944.666 kb on - strand at 944.831 kb on - strand at 944.831 kb on - strand at 944.831 kb on - strand at 944.831 kb on - strand at 944.832 kb on + strand at 944.833 kb on - strand at 944.867 kb on + strand at 944.867 kb on + strand at 944.868 kb on - strand at 944.905 kb on + strand at 944.995 kb on + strand at 944.995 kb on + strand at 944.996 kb on - strand at 945.088 kb on + strand, within ilvC at 945.135 kb on + strand, within ilvC at 945.136 kb on - strand, within ilvC at 945.136 kb on - strand, within ilvC at 945.170 kb on - strand, within ilvC at 945.170 kb on - strand, within ilvC at 945.237 kb on - strand, within ilvC at 945.249 kb on - strand, within ilvC at 945.328 kb on - strand, within ilvC at 945.342 kb on - strand, within ilvC at 945.388 kb on + strand, within ilvC at 945.389 kb on - strand, within ilvC at 945.457 kb on - strand, within ilvC at 945.468 kb on + strand, within ilvC at 945.576 kb on + strand, within ilvC at 945.641 kb on - strand, within ilvC at 945.752 kb on - strand, within ilvC at 945.805 kb on - strand, within ilvC at 945.867 kb on + strand, within ilvC at 945.867 kb on + strand, within ilvC at 945.868 kb on - strand, within ilvC at 945.929 kb on - strand, within ilvC at 945.956 kb on - strand, within ilvC at 946.054 kb on + strand, within ilvC at 946.054 kb on + strand, within ilvC at 946.057 kb on + strand, within ilvC at 946.057 kb on + strand, within ilvC at 946.058 kb on - strand, within ilvC at 946.058 kb on - strand, within ilvC at 946.159 kb on + strand, within ilvC at 946.159 kb on + strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.172 kb on - strand, within ilvC at 946.236 kb on + strand at 946.237 kb on - strand at 946.313 kb on + strand at 946.333 kb on + strand at 946.334 kb on - strand at 946.344 kb on + strand at 946.345 kb on - strand at 946.345 kb on - strand at 946.353 kb on + strand at 946.353 kb on + strand at 946.353 kb on + strand at 946.354 kb on - strand at 946.456 kb on + strand at 946.456 kb on + strand at 946.457 kb on - strand at 946.459 kb on + strand at 946.459 kb on + strand at 946.459 kb on + strand at 946.479 kb on - strand at 946.550 kb on + strand, within ppiC at 946.591 kb on - strand, within ppiC at 946.591 kb on - strand, within ppiC at 946.758 kb on + strand at 946.759 kb on - strand at 946.778 kb on + strand at 946.802 kb on + strand at 946.802 kb on + strand at 946.802 kb on + strand at 946.803 kb on - strand at 946.803 kb on - strand at 946.827 kb on + strand at 946.827 kb on + strand at 946.828 kb on - strand at 946.828 kb on - strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.833 kb on + strand at 946.834 kb on - strand at 946.987 kb on - strand, within yifN at 946.987 kb on - strand, within yifN at 947.022 kb on - strand, within yifN at 947.022 kb on - strand, within yifN at 947.027 kb on - strand, within yifN at 947.036 kb on - strand, within yifN at 947.169 kb on + strand, within yifN at 947.196 kb on + strand, within yifN at 947.210 kb on + strand, within yifN at 947.211 kb on - strand, within yifN at 947.251 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.293 kb on + strand, within yifN at 947.329 kb on + strand, within yifN at 947.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 944,089 - ilvY BNILDI_04760 0.26 -2.3 944,371 + ilvY BNILDI_04760 0.58 -2.6 944,374 + ilvY BNILDI_04760 0.58 -4.6 944,374 + ilvY BNILDI_04760 0.58 -2.1 944,375 - ilvY BNILDI_04760 0.58 -0.5 944,375 - ilvY BNILDI_04760 0.58 -3.3 944,375 - ilvY BNILDI_04760 0.58 -3.1 944,465 - ilvY BNILDI_04760 0.68 -2.0 944,469 - ilvY BNILDI_04760 0.69 -1.3 944,666 - -3.2 944,831 - -1.8 944,831 - -0.8 944,831 - -2.1 944,831 - -3.8 944,832 + -1.9 944,833 - -2.6 944,867 + -0.3 944,867 + -0.5 944,868 - -0.6 944,905 + -3.0 944,995 + -3.2 944,995 + -3.2 944,996 - -1.7 945,088 + ilvC BNILDI_04765 0.13 -2.7 945,135 + ilvC BNILDI_04765 0.16 -2.4 945,136 - ilvC BNILDI_04765 0.16 -3.7 945,136 - ilvC BNILDI_04765 0.16 -4.3 945,170 - ilvC BNILDI_04765 0.19 -1.7 945,170 - ilvC BNILDI_04765 0.19 -3.3 945,237 - ilvC BNILDI_04765 0.23 -2.2 945,249 - ilvC BNILDI_04765 0.24 -4.8 945,328 - ilvC BNILDI_04765 0.29 -4.9 945,342 - ilvC BNILDI_04765 0.30 -3.7 945,388 + ilvC BNILDI_04765 0.33 -3.0 945,389 - ilvC BNILDI_04765 0.33 -3.2 945,457 - ilvC BNILDI_04765 0.38 -3.9 945,468 + ilvC BNILDI_04765 0.39 -0.2 945,576 + ilvC BNILDI_04765 0.46 -3.7 945,641 - ilvC BNILDI_04765 0.50 -4.2 945,752 - ilvC BNILDI_04765 0.58 -1.5 945,805 - ilvC BNILDI_04765 0.62 -3.0 945,867 + ilvC BNILDI_04765 0.66 -0.4 945,867 + ilvC BNILDI_04765 0.66 -3.3 945,868 - ilvC BNILDI_04765 0.66 -2.7 945,929 - ilvC BNILDI_04765 0.70 -3.3 945,956 - ilvC BNILDI_04765 0.72 -2.5 946,054 + ilvC BNILDI_04765 0.78 -3.7 946,054 + ilvC BNILDI_04765 0.78 -4.6 946,057 + ilvC BNILDI_04765 0.79 -2.0 946,057 + ilvC BNILDI_04765 0.79 -4.1 946,058 - ilvC BNILDI_04765 0.79 -2.9 946,058 - ilvC BNILDI_04765 0.79 -2.3 946,159 + ilvC BNILDI_04765 0.86 -3.3 946,159 + ilvC BNILDI_04765 0.86 -1.3 946,160 - ilvC BNILDI_04765 0.86 -2.6 946,160 - ilvC BNILDI_04765 0.86 -2.4 946,160 - ilvC BNILDI_04765 0.86 -5.1 946,160 - ilvC BNILDI_04765 0.86 -3.4 946,160 - ilvC BNILDI_04765 0.86 -2.5 946,172 - ilvC BNILDI_04765 0.86 -2.4 946,236 + -4.1 946,237 - -2.7 946,313 + +0.9 946,333 + -0.6 946,334 - +0.4 946,344 + +0.7 946,345 - -0.9 946,345 - -0.2 946,353 + +0.7 946,353 + +0.7 946,353 + +1.2 946,354 - +1.1 946,456 + +0.9 946,456 + +0.3 946,457 - -2.9 946,459 + +0.4 946,459 + -1.3 946,459 + -0.5 946,479 - +0.2 946,550 + ppiC BNILDI_04770 0.33 -1.6 946,591 - ppiC BNILDI_04770 0.47 -0.0 946,591 - ppiC BNILDI_04770 0.47 +0.1 946,758 + +0.8 946,759 - +0.4 946,778 + +0.3 946,802 + +0.6 946,802 + +0.9 946,802 + -0.2 946,803 - +1.0 946,803 - +0.1 946,827 + +0.5 946,827 + -0.7 946,828 - -0.3 946,828 - +0.3 946,831 + -0.1 946,831 + +0.6 946,831 + -0.6 946,831 + -0.1 946,831 + +0.8 946,831 + +0.0 946,831 + +2.0 946,831 + -0.0 946,831 + +0.6 946,831 + +0.6 946,831 + +0.2 946,831 + +0.1 946,831 + +0.0 946,831 + +1.2 946,831 + +0.1 946,832 - -0.5 946,832 - +0.0 946,832 - +0.6 946,832 - -1.2 946,832 - +0.0 946,832 - +0.2 946,832 - -0.0 946,832 - +0.2 946,832 - -0.3 946,832 - -1.1 946,832 - +0.5 946,833 + -0.3 946,834 - +0.2 946,987 - yifN BNILDI_04775 0.11 -0.1 946,987 - yifN BNILDI_04775 0.11 +0.3 947,022 - yifN BNILDI_04775 0.19 -0.2 947,022 - yifN BNILDI_04775 0.19 -0.1 947,027 - yifN BNILDI_04775 0.20 -0.3 947,036 - yifN BNILDI_04775 0.22 -0.0 947,169 + yifN BNILDI_04775 0.51 +0.4 947,196 + yifN BNILDI_04775 0.57 -0.0 947,210 + yifN BNILDI_04775 0.60 -0.3 947,211 - yifN BNILDI_04775 0.61 +0.4 947,251 - yifN BNILDI_04775 0.70 +0.1 947,291 - yifN BNILDI_04775 0.78 +0.8 947,291 - yifN BNILDI_04775 0.78 -0.1 947,291 - yifN BNILDI_04775 0.78 +1.3 947,293 + yifN BNILDI_04775 0.79 +0.5 947,329 + yifN BNILDI_04775 0.87 +0.1 947,367 - +0.3
Or see this region's nucleotide sequence