Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ilvE and ilvD are separated by 64 nucleotides ilvD and ilvA are separated by 2 nucleotides
BNILDI_04745: ilvE - branched-chain-amino-acid transaminase, at 939,468 to 940,397
ilvE
BNILDI_04750: ilvD - dihydroxy-acid dehydratase, at 940,462 to 942,312
ilvD
BNILDI_04755: ilvA - threonine ammonia-lyase, biosynthetic, at 942,315 to 943,859
ilvA
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 939.463 kb on + strand at 939.489 kb on + strand at 939.490 kb on - strand at 939.561 kb on + strand, within ilvE at 939.595 kb on - strand, within ilvE at 939.638 kb on + strand, within ilvE at 939.737 kb on + strand, within ilvE at 939.738 kb on - strand, within ilvE at 939.738 kb on - strand, within ilvE at 939.797 kb on - strand, within ilvE at 939.956 kb on + strand, within ilvE at 939.961 kb on - strand, within ilvE at 939.961 kb on - strand, within ilvE at 939.961 kb on - strand, within ilvE at 940.039 kb on - strand, within ilvE at 940.040 kb on + strand, within ilvE at 940.040 kb on + strand, within ilvE at 940.040 kb on + strand, within ilvE at 940.041 kb on - strand, within ilvE at 940.041 kb on - strand, within ilvE at 940.177 kb on + strand, within ilvE at 940.178 kb on - strand, within ilvE at 940.229 kb on + strand, within ilvE at 940.229 kb on + strand, within ilvE at 940.229 kb on + strand, within ilvE at 940.230 kb on - strand, within ilvE at 940.230 kb on - strand, within ilvE at 940.364 kb on + strand at 940.378 kb on + strand at 940.378 kb on + strand at 940.379 kb on - strand at 940.379 kb on - strand at 940.389 kb on - strand at 940.389 kb on - strand at 940.395 kb on + strand at 940.395 kb on + strand at 940.453 kb on - strand at 940.453 kb on - strand at 940.456 kb on + strand at 940.456 kb on + strand at 940.461 kb on + strand at 940.461 kb on + strand at 940.462 kb on - strand at 940.467 kb on + strand at 940.467 kb on + strand at 940.467 kb on + strand at 940.468 kb on - strand at 940.468 kb on - strand at 940.468 kb on - strand at 940.500 kb on + strand at 940.500 kb on + strand at 940.501 kb on - strand at 940.504 kb on - strand at 940.601 kb on + strand at 940.777 kb on + strand, within ilvD at 940.777 kb on + strand, within ilvD at 940.777 kb on + strand, within ilvD at 940.777 kb on + strand, within ilvD at 940.778 kb on - strand, within ilvD at 940.778 kb on - strand, within ilvD at 940.778 kb on - strand, within ilvD at 940.778 kb on - strand, within ilvD at 940.778 kb on - strand, within ilvD at 940.779 kb on + strand, within ilvD at 940.779 kb on + strand, within ilvD at 940.821 kb on + strand, within ilvD at 940.873 kb on - strand, within ilvD at 941.059 kb on - strand, within ilvD at 941.146 kb on - strand, within ilvD at 941.197 kb on + strand, within ilvD at 941.307 kb on - strand, within ilvD at 941.397 kb on + strand, within ilvD at 941.423 kb on - strand, within ilvD at 941.423 kb on - strand, within ilvD at 941.423 kb on - strand, within ilvD at 941.463 kb on + strand, within ilvD at 941.516 kb on + strand, within ilvD at 941.517 kb on - strand, within ilvD at 941.559 kb on + strand, within ilvD at 941.589 kb on + strand, within ilvD at 941.738 kb on - strand, within ilvD at 941.825 kb on - strand, within ilvD at 941.846 kb on + strand, within ilvD at 941.846 kb on + strand, within ilvD at 941.846 kb on + strand, within ilvD at 941.846 kb on + strand, within ilvD at 942.135 kb on - strand at 942.140 kb on + strand at 942.141 kb on - strand at 942.292 kb on - strand at 942.314 kb on - strand at 942.360 kb on + strand at 942.361 kb on - strand at 942.364 kb on + strand at 942.365 kb on - strand at 942.365 kb on - strand at 942.497 kb on + strand, within ilvA at 942.498 kb on - strand, within ilvA at 942.513 kb on + strand, within ilvA at 942.677 kb on - strand, within ilvA at 942.734 kb on + strand, within ilvA at 943.087 kb on - strand, within ilvA at 943.210 kb on - strand, within ilvA at 943.211 kb on + strand, within ilvA at 943.251 kb on - strand, within ilvA at 943.291 kb on - strand, within ilvA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 939,463 + -2.6 939,489 + +1.0 939,490 - -2.9 939,561 + ilvE BNILDI_04745 0.10 -4.8 939,595 - ilvE BNILDI_04745 0.14 -4.7 939,638 + ilvE BNILDI_04745 0.18 -2.7 939,737 + ilvE BNILDI_04745 0.29 -2.6 939,738 - ilvE BNILDI_04745 0.29 -1.8 939,738 - ilvE BNILDI_04745 0.29 -5.5 939,797 - ilvE BNILDI_04745 0.35 -3.8 939,956 + ilvE BNILDI_04745 0.52 +1.6 939,961 - ilvE BNILDI_04745 0.53 -1.8 939,961 - ilvE BNILDI_04745 0.53 -1.4 939,961 - ilvE BNILDI_04745 0.53 -1.4 940,039 - ilvE BNILDI_04745 0.61 -4.0 940,040 + ilvE BNILDI_04745 0.62 -3.0 940,040 + ilvE BNILDI_04745 0.62 -2.1 940,040 + ilvE BNILDI_04745 0.62 -0.3 940,041 - ilvE BNILDI_04745 0.62 -2.2 940,041 - ilvE BNILDI_04745 0.62 -3.5 940,177 + ilvE BNILDI_04745 0.76 -3.7 940,178 - ilvE BNILDI_04745 0.76 -3.7 940,229 + ilvE BNILDI_04745 0.82 -3.3 940,229 + ilvE BNILDI_04745 0.82 -4.6 940,229 + ilvE BNILDI_04745 0.82 -3.6 940,230 - ilvE BNILDI_04745 0.82 -3.2 940,230 - ilvE BNILDI_04745 0.82 -3.5 940,364 + -4.1 940,378 + -2.2 940,378 + -2.3 940,379 - -2.2 940,379 - -3.5 940,389 - -4.2 940,389 - -3.3 940,395 + +0.0 940,395 + -0.1 940,453 - -3.6 940,453 - -2.6 940,456 + -4.5 940,456 + -1.4 940,461 + -2.7 940,461 + -3.9 940,462 - -3.6 940,467 + -2.8 940,467 + -3.3 940,467 + -2.6 940,468 - -1.7 940,468 - -2.5 940,468 - -2.6 940,500 + -2.4 940,500 + -1.0 940,501 - -0.9 940,504 - -3.7 940,601 + -4.4 940,777 + ilvD BNILDI_04750 0.17 -3.0 940,777 + ilvD BNILDI_04750 0.17 +0.1 940,777 + ilvD BNILDI_04750 0.17 -3.2 940,777 + ilvD BNILDI_04750 0.17 -2.6 940,778 - ilvD BNILDI_04750 0.17 -2.1 940,778 - ilvD BNILDI_04750 0.17 -2.0 940,778 - ilvD BNILDI_04750 0.17 +0.3 940,778 - ilvD BNILDI_04750 0.17 -2.8 940,778 - ilvD BNILDI_04750 0.17 -2.2 940,779 + ilvD BNILDI_04750 0.17 -1.0 940,779 + ilvD BNILDI_04750 0.17 -3.3 940,821 + ilvD BNILDI_04750 0.19 -1.8 940,873 - ilvD BNILDI_04750 0.22 -1.3 941,059 - ilvD BNILDI_04750 0.32 -4.3 941,146 - ilvD BNILDI_04750 0.37 -4.6 941,197 + ilvD BNILDI_04750 0.40 -3.9 941,307 - ilvD BNILDI_04750 0.46 -4.5 941,397 + ilvD BNILDI_04750 0.51 -1.3 941,423 - ilvD BNILDI_04750 0.52 -1.9 941,423 - ilvD BNILDI_04750 0.52 -2.8 941,423 - ilvD BNILDI_04750 0.52 -3.4 941,463 + ilvD BNILDI_04750 0.54 -2.5 941,516 + ilvD BNILDI_04750 0.57 -2.4 941,517 - ilvD BNILDI_04750 0.57 -2.6 941,559 + ilvD BNILDI_04750 0.59 -3.4 941,589 + ilvD BNILDI_04750 0.61 -3.8 941,738 - ilvD BNILDI_04750 0.69 -1.5 941,825 - ilvD BNILDI_04750 0.74 -2.2 941,846 + ilvD BNILDI_04750 0.75 -3.2 941,846 + ilvD BNILDI_04750 0.75 -1.6 941,846 + ilvD BNILDI_04750 0.75 -2.9 941,846 + ilvD BNILDI_04750 0.75 -2.8 942,135 - -2.9 942,140 + -2.1 942,141 - -0.8 942,292 - -2.4 942,314 - -4.3 942,360 + -3.6 942,361 - -3.0 942,364 + -2.5 942,365 - -0.4 942,365 - -1.7 942,497 + ilvA BNILDI_04755 0.12 -2.4 942,498 - ilvA BNILDI_04755 0.12 -2.8 942,513 + ilvA BNILDI_04755 0.13 -0.6 942,677 - ilvA BNILDI_04755 0.23 -4.6 942,734 + ilvA BNILDI_04755 0.27 -2.2 943,087 - ilvA BNILDI_04755 0.50 -2.5 943,210 - ilvA BNILDI_04755 0.58 -4.3 943,211 + ilvA BNILDI_04755 0.58 -2.2 943,251 - ilvA BNILDI_04755 0.61 -2.7 943,291 - ilvA BNILDI_04755 0.63 -2.7
Or see this region's nucleotide sequence