Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hdfR and maoP are separated by 118 nucleotides maoP and yifB are separated by 25 nucleotides
BNILDI_04715: hdfR - HTH-type transcriptional regulator HdfR, at 934,109 to 934,948
hdfR
BNILDI_04720: maoP - macrodomain Ori organization protein MaoP, at 935,067 to 935,405
maoP
BNILDI_04725: yifB - YifB family Mg chelatase-like AAA ATPase, at 935,431 to 936,951
yifB
Position (kb) 935
936 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 934.073 kb on - strand at 934.107 kb on + strand at 934.107 kb on + strand at 934.108 kb on - strand at 934.108 kb on - strand at 934.108 kb on - strand at 934.108 kb on - strand at 934.108 kb on - strand at 934.108 kb on - strand at 934.110 kb on + strand at 934.111 kb on - strand at 934.111 kb on - strand at 934.113 kb on + strand at 934.113 kb on + strand at 934.113 kb on + strand at 934.114 kb on - strand at 934.404 kb on + strand, within hdfR at 934.404 kb on + strand, within hdfR at 934.408 kb on + strand, within hdfR at 934.408 kb on + strand, within hdfR at 934.409 kb on - strand, within hdfR at 934.409 kb on - strand, within hdfR at 934.421 kb on + strand, within hdfR at 934.427 kb on - strand, within hdfR at 934.427 kb on - strand, within hdfR at 934.441 kb on + strand, within hdfR at 934.442 kb on - strand, within hdfR at 934.443 kb on + strand, within hdfR at 934.443 kb on + strand, within hdfR at 934.444 kb on - strand, within hdfR at 934.480 kb on + strand, within hdfR at 934.511 kb on - strand, within hdfR at 934.586 kb on + strand, within hdfR at 934.586 kb on + strand, within hdfR at 934.587 kb on - strand, within hdfR at 934.636 kb on + strand, within hdfR at 934.642 kb on + strand, within hdfR at 934.642 kb on + strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.749 kb on + strand, within hdfR at 934.749 kb on + strand, within hdfR at 934.913 kb on - strand at 934.967 kb on - strand at 935.013 kb on + strand at 935.036 kb on + strand at 935.036 kb on + strand at 935.036 kb on + strand at 935.037 kb on - strand at 935.254 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.309 kb on + strand, within maoP at 935.309 kb on + strand, within maoP at 935.310 kb on - strand, within maoP at 935.310 kb on - strand, within maoP at 935.386 kb on - strand at 935.386 kb on - strand at 935.484 kb on + strand at 935.484 kb on + strand at 935.485 kb on - strand at 935.485 kb on - strand at 935.685 kb on + strand, within yifB at 935.723 kb on - strand, within yifB at 935.769 kb on + strand, within yifB at 935.770 kb on - strand, within yifB at 935.853 kb on - strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 936.024 kb on + strand, within yifB at 936.024 kb on + strand, within yifB at 936.024 kb on + strand, within yifB at 936.197 kb on - strand, within yifB at 936.205 kb on + strand, within yifB at 936.205 kb on + strand, within yifB at 936.206 kb on - strand, within yifB at 936.206 kb on - strand, within yifB at 936.206 kb on - strand, within yifB at 936.241 kb on + strand, within yifB at 936.241 kb on + strand, within yifB at 936.241 kb on + strand, within yifB at 936.242 kb on - strand, within yifB at 936.261 kb on + strand, within yifB at 936.265 kb on - strand, within yifB at 936.285 kb on + strand, within yifB at 936.285 kb on + strand, within yifB at 936.286 kb on - strand, within yifB at 936.394 kb on + strand, within yifB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 934,073 - +0.6 934,107 + +0.3 934,107 + -0.1 934,108 - +0.4 934,108 - +0.2 934,108 - +0.4 934,108 - +0.2 934,108 - +0.8 934,108 - +0.5 934,110 + -0.5 934,111 - -0.0 934,111 - -0.4 934,113 + -0.1 934,113 + -0.2 934,113 + -0.2 934,114 - +0.5 934,404 + hdfR BNILDI_04715 0.35 +1.6 934,404 + hdfR BNILDI_04715 0.35 -0.9 934,408 + hdfR BNILDI_04715 0.36 -2.2 934,408 + hdfR BNILDI_04715 0.36 -1.6 934,409 - hdfR BNILDI_04715 0.36 -1.3 934,409 - hdfR BNILDI_04715 0.36 -1.7 934,421 + hdfR BNILDI_04715 0.37 -3.0 934,427 - hdfR BNILDI_04715 0.38 -1.6 934,427 - hdfR BNILDI_04715 0.38 +0.2 934,441 + hdfR BNILDI_04715 0.40 -1.8 934,442 - hdfR BNILDI_04715 0.40 -1.0 934,443 + hdfR BNILDI_04715 0.40 -1.0 934,443 + hdfR BNILDI_04715 0.40 -1.4 934,444 - hdfR BNILDI_04715 0.40 -1.8 934,480 + hdfR BNILDI_04715 0.44 -1.0 934,511 - hdfR BNILDI_04715 0.48 -1.8 934,586 + hdfR BNILDI_04715 0.57 -1.6 934,586 + hdfR BNILDI_04715 0.57 +1.3 934,587 - hdfR BNILDI_04715 0.57 -0.7 934,636 + hdfR BNILDI_04715 0.63 -1.4 934,642 + hdfR BNILDI_04715 0.63 -1.5 934,642 + hdfR BNILDI_04715 0.63 -1.1 934,643 - hdfR BNILDI_04715 0.64 -1.6 934,643 - hdfR BNILDI_04715 0.64 +0.7 934,643 - hdfR BNILDI_04715 0.64 -1.5 934,643 - hdfR BNILDI_04715 0.64 -1.1 934,749 + hdfR BNILDI_04715 0.76 -0.9 934,749 + hdfR BNILDI_04715 0.76 -0.8 934,913 - -0.8 934,967 - -2.7 935,013 + -0.7 935,036 + -0.6 935,036 + -1.3 935,036 + -0.7 935,037 - -3.4 935,254 + maoP BNILDI_04720 0.55 -1.5 935,307 + maoP BNILDI_04720 0.71 -1.7 935,307 + maoP BNILDI_04720 0.71 -2.7 935,307 + maoP BNILDI_04720 0.71 -2.8 935,307 + maoP BNILDI_04720 0.71 -1.6 935,308 - maoP BNILDI_04720 0.71 -1.6 935,308 - maoP BNILDI_04720 0.71 -0.9 935,308 - maoP BNILDI_04720 0.71 -3.9 935,308 - maoP BNILDI_04720 0.71 -2.9 935,308 - maoP BNILDI_04720 0.71 -1.3 935,309 + maoP BNILDI_04720 0.71 -1.2 935,309 + maoP BNILDI_04720 0.71 -0.5 935,310 - maoP BNILDI_04720 0.72 -1.1 935,310 - maoP BNILDI_04720 0.72 -1.0 935,386 - +0.1 935,386 - -0.2 935,484 + -0.0 935,484 + +0.9 935,485 - +0.5 935,485 - +0.2 935,685 + yifB BNILDI_04725 0.17 +0.5 935,723 - yifB BNILDI_04725 0.19 -0.2 935,769 + yifB BNILDI_04725 0.22 +0.1 935,770 - yifB BNILDI_04725 0.22 -0.5 935,853 - yifB BNILDI_04725 0.28 +0.3 935,857 + yifB BNILDI_04725 0.28 +0.8 935,857 + yifB BNILDI_04725 0.28 -2.8 935,857 + yifB BNILDI_04725 0.28 -0.2 935,857 + yifB BNILDI_04725 0.28 -0.1 935,857 + yifB BNILDI_04725 0.28 -1.3 935,857 + yifB BNILDI_04725 0.28 -1.2 935,858 - yifB BNILDI_04725 0.28 -0.2 935,858 - yifB BNILDI_04725 0.28 +1.0 935,858 - yifB BNILDI_04725 0.28 +1.0 935,858 - yifB BNILDI_04725 0.28 +0.1 935,858 - yifB BNILDI_04725 0.28 +0.0 936,024 + yifB BNILDI_04725 0.39 +0.5 936,024 + yifB BNILDI_04725 0.39 +0.5 936,024 + yifB BNILDI_04725 0.39 -0.3 936,197 - yifB BNILDI_04725 0.50 -0.5 936,205 + yifB BNILDI_04725 0.51 -0.3 936,205 + yifB BNILDI_04725 0.51 -0.5 936,206 - yifB BNILDI_04725 0.51 -0.2 936,206 - yifB BNILDI_04725 0.51 -0.6 936,206 - yifB BNILDI_04725 0.51 +0.6 936,241 + yifB BNILDI_04725 0.53 -0.4 936,241 + yifB BNILDI_04725 0.53 -0.3 936,241 + yifB BNILDI_04725 0.53 -0.9 936,242 - yifB BNILDI_04725 0.53 -1.6 936,261 + yifB BNILDI_04725 0.55 -0.7 936,265 - yifB BNILDI_04725 0.55 -0.1 936,285 + yifB BNILDI_04725 0.56 -0.8 936,285 + yifB BNILDI_04725 0.56 -1.4 936,286 - yifB BNILDI_04725 0.56 +0.2 936,394 + yifB BNILDI_04725 0.63 -0.2
Or see this region's nucleotide sequence