Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pstC and pstS are separated by 86 nucleotides pstS and BNILDI_04520 are separated by 247 nucleotides
BNILDI_04510: pstC - phosphate ABC transporter permease PstC, at 891,201 to 892,160
pstC
BNILDI_04515: pstS - phosphate ABC transporter substrate-binding protein PstS, at 892,247 to 893,287
pstS
BNILDI_04520: BNILDI_04520 - fimbrial protein, at 893,535 to 894,608
_04520
Position (kb) 892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.378 kb on - strand, within pstC at 891.380 kb on - strand, within pstC at 891.380 kb on - strand, within pstC at 891.380 kb on - strand, within pstC at 891.380 kb on - strand, within pstC at 891.404 kb on - strand, within pstC at 891.404 kb on - strand, within pstC at 891.404 kb on - strand, within pstC at 891.519 kb on - strand, within pstC at 891.934 kb on + strand, within pstC at 892.166 kb on - strand at 892.249 kb on - strand at 892.276 kb on + strand at 892.314 kb on - strand at 892.314 kb on - strand at 892.319 kb on - strand at 892.372 kb on - strand, within pstS at 892.451 kb on - strand, within pstS at 892.451 kb on - strand, within pstS at 892.457 kb on - strand, within pstS at 892.457 kb on - strand, within pstS at 892.457 kb on - strand, within pstS at 892.457 kb on - strand, within pstS at 892.716 kb on - strand, within pstS at 892.815 kb on - strand, within pstS at 892.903 kb on - strand, within pstS at 892.903 kb on - strand, within pstS at 893.069 kb on - strand, within pstS at 893.072 kb on - strand, within pstS at 893.082 kb on - strand, within pstS at 893.116 kb on - strand, within pstS at 893.288 kb on - strand at 893.310 kb on - strand at 893.364 kb on + strand at 893.365 kb on - strand at 893.365 kb on - strand at 893.365 kb on - strand at 893.369 kb on - strand at 893.473 kb on + strand at 893.473 kb on + strand at 893.533 kb on + strand at 893.533 kb on + strand at 893.534 kb on - strand at 893.631 kb on + strand at 893.632 kb on - strand at 893.653 kb on + strand, within BNILDI_04520 at 893.653 kb on + strand, within BNILDI_04520 at 893.654 kb on - strand, within BNILDI_04520 at 893.757 kb on + strand, within BNILDI_04520 at 893.804 kb on + strand, within BNILDI_04520 at 893.805 kb on - strand, within BNILDI_04520 at 893.805 kb on - strand, within BNILDI_04520 at 894.252 kb on + strand, within BNILDI_04520 at 894.252 kb on + strand, within BNILDI_04520 at 894.254 kb on + strand, within BNILDI_04520
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 891,378 - pstC BNILDI_04510 0.18 +2.2 891,380 - pstC BNILDI_04510 0.19 -0.6 891,380 - pstC BNILDI_04510 0.19 -2.5 891,380 - pstC BNILDI_04510 0.19 -0.6 891,380 - pstC BNILDI_04510 0.19 -1.2 891,404 - pstC BNILDI_04510 0.21 -0.6 891,404 - pstC BNILDI_04510 0.21 -1.3 891,404 - pstC BNILDI_04510 0.21 -1.5 891,519 - pstC BNILDI_04510 0.33 +0.4 891,934 + pstC BNILDI_04510 0.76 -1.1 892,166 - -1.3 892,249 - -0.5 892,276 + -1.8 892,314 - -0.1 892,314 - -0.3 892,319 - -0.5 892,372 - pstS BNILDI_04515 0.12 -0.3 892,451 - pstS BNILDI_04515 0.20 -3.2 892,451 - pstS BNILDI_04515 0.20 -0.2 892,457 - pstS BNILDI_04515 0.20 -1.9 892,457 - pstS BNILDI_04515 0.20 -0.7 892,457 - pstS BNILDI_04515 0.20 -0.6 892,457 - pstS BNILDI_04515 0.20 +0.2 892,716 - pstS BNILDI_04515 0.45 -1.4 892,815 - pstS BNILDI_04515 0.55 -2.0 892,903 - pstS BNILDI_04515 0.63 -2.4 892,903 - pstS BNILDI_04515 0.63 -3.7 893,069 - pstS BNILDI_04515 0.79 -3.2 893,072 - pstS BNILDI_04515 0.79 -0.8 893,082 - pstS BNILDI_04515 0.80 -2.5 893,116 - pstS BNILDI_04515 0.83 -0.8 893,288 - -1.5 893,310 - +0.5 893,364 + +0.8 893,365 - -0.2 893,365 - -0.0 893,365 - +1.4 893,369 - -0.1 893,473 + +0.2 893,473 + -0.4 893,533 + -0.2 893,533 + -1.7 893,534 - +0.7 893,631 + -0.4 893,632 - -0.4 893,653 + BNILDI_04520 0.11 +0.3 893,653 + BNILDI_04520 0.11 -1.0 893,654 - BNILDI_04520 0.11 +1.2 893,757 + BNILDI_04520 0.21 -0.0 893,804 + BNILDI_04520 0.25 -0.6 893,805 - BNILDI_04520 0.25 +1.9 893,805 - BNILDI_04520 0.25 -1.6 894,252 + BNILDI_04520 0.67 -0.1 894,252 + BNILDI_04520 0.67 -1.0 894,254 + BNILDI_04520 0.67 -0.6
Or see this region's nucleotide sequence