Strain Fitness in Escherichia coli ECRC62 around BNILDI_04510

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpstB and pstA are separated by 90 nucleotidespstA and pstC overlap by 1 nucleotidespstC and pstS are separated by 86 nucleotides BNILDI_04500: pstB - phosphate ABC transporter ATP-binding protein PstB, at 889,447 to 890,220 pstB BNILDI_04505: pstA - phosphate ABC transporter permease PstA, at 890,311 to 891,201 pstA BNILDI_04510: pstC - phosphate ABC transporter permease PstC, at 891,201 to 892,160 pstC BNILDI_04515: pstS - phosphate ABC transporter substrate-binding protein PstS, at 892,247 to 893,287 pstS Position (kb) 891 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 890.640 kb on - strand, within pstAat 891.024 kb on + strand, within pstAat 891.055 kb on + strand, within pstAat 891.240 kb on - strandat 891.378 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.404 kb on - strand, within pstCat 891.404 kb on - strand, within pstCat 891.404 kb on - strand, within pstCat 891.519 kb on - strand, within pstCat 891.934 kb on + strand, within pstCat 892.166 kb on - strandat 892.249 kb on - strandat 892.276 kb on + strandat 892.314 kb on - strandat 892.314 kb on - strandat 892.319 kb on - strandat 892.372 kb on - strand, within pstSat 892.451 kb on - strand, within pstSat 892.451 kb on - strand, within pstSat 892.457 kb on - strand, within pstSat 892.457 kb on - strand, within pstSat 892.457 kb on - strand, within pstSat 892.457 kb on - strand, within pstSat 892.716 kb on - strand, within pstSat 892.815 kb on - strand, within pstSat 892.903 kb on - strand, within pstSat 892.903 kb on - strand, within pstSat 893.069 kb on - strand, within pstSat 893.072 kb on - strand, within pstSat 893.082 kb on - strand, within pstSat 893.116 kb on - strand, within pstS

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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890,640 - pstA BNILDI_04505 0.37 +0.6
891,024 + pstA BNILDI_04505 0.80 -2.4
891,055 + pstA BNILDI_04505 0.84 -2.9
891,240 - -0.7
891,378 - pstC BNILDI_04510 0.18 +2.2
891,380 - pstC BNILDI_04510 0.19 -0.6
891,380 - pstC BNILDI_04510 0.19 -2.5
891,380 - pstC BNILDI_04510 0.19 -0.6
891,380 - pstC BNILDI_04510 0.19 -1.2
891,404 - pstC BNILDI_04510 0.21 -0.6
891,404 - pstC BNILDI_04510 0.21 -1.3
891,404 - pstC BNILDI_04510 0.21 -1.5
891,519 - pstC BNILDI_04510 0.33 +0.4
891,934 + pstC BNILDI_04510 0.76 -1.1
892,166 - -1.3
892,249 - -0.5
892,276 + -1.8
892,314 - -0.1
892,314 - -0.3
892,319 - -0.5
892,372 - pstS BNILDI_04515 0.12 -0.3
892,451 - pstS BNILDI_04515 0.20 -3.2
892,451 - pstS BNILDI_04515 0.20 -0.2
892,457 - pstS BNILDI_04515 0.20 -1.9
892,457 - pstS BNILDI_04515 0.20 -0.7
892,457 - pstS BNILDI_04515 0.20 -0.6
892,457 - pstS BNILDI_04515 0.20 +0.2
892,716 - pstS BNILDI_04515 0.45 -1.4
892,815 - pstS BNILDI_04515 0.55 -2.0
892,903 - pstS BNILDI_04515 0.63 -2.4
892,903 - pstS BNILDI_04515 0.63 -3.7
893,069 - pstS BNILDI_04515 0.79 -3.2
893,072 - pstS BNILDI_04515 0.79 -0.8
893,082 - pstS BNILDI_04515 0.80 -2.5
893,116 - pstS BNILDI_04515 0.83 -0.8

Or see this region's nucleotide sequence