Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_04405 and tnaC are separated by 242 nucleotides tnaC and tnaA are separated by 220 nucleotides tnaA and tnaB are separated by 90 nucleotides
BNILDI_04405: BNILDI_04405 - tRNA modification GTPase MnmE, at 869,306 to 870,670
_04405
BNILDI_04410: tnaC - tryptophanase leader peptide, at 870,913 to 870,987
tnaC
BNILDI_04415: tnaA - tryptophanase, at 871,208 to 872,623
tnaA
BNILDI_04420: tnaB - low affinity tryptophan permease TnaB, at 872,714 to 873,961
tnaB
Position (kb) 871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 870.514 kb on - strand, within BNILDI_04405 at 870.595 kb on - strand at 870.665 kb on - strand at 870.723 kb on + strand at 870.873 kb on - strand at 870.904 kb on - strand at 870.927 kb on + strand, within tnaC at 870.928 kb on - strand, within tnaC at 870.928 kb on - strand, within tnaC at 870.985 kb on + strand at 871.124 kb on + strand at 871.127 kb on - strand at 871.127 kb on - strand at 871.128 kb on + strand at 871.130 kb on + strand at 871.130 kb on + strand at 871.130 kb on + strand at 871.274 kb on - strand at 871.393 kb on + strand, within tnaA at 871.393 kb on + strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.446 kb on - strand, within tnaA at 871.492 kb on + strand, within tnaA at 871.532 kb on + strand, within tnaA at 871.608 kb on - strand, within tnaA at 871.660 kb on + strand, within tnaA at 871.667 kb on + strand, within tnaA at 871.667 kb on + strand, within tnaA at 871.668 kb on - strand, within tnaA at 871.668 kb on - strand, within tnaA at 871.700 kb on + strand, within tnaA at 871.735 kb on - strand, within tnaA at 871.735 kb on - strand, within tnaA at 871.775 kb on + strand, within tnaA at 871.775 kb on + strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.798 kb on + strand, within tnaA at 871.847 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.871 kb on - strand, within tnaA at 871.881 kb on + strand, within tnaA at 871.940 kb on + strand, within tnaA at 871.941 kb on - strand, within tnaA at 871.986 kb on - strand, within tnaA at 871.986 kb on - strand, within tnaA at 871.986 kb on - strand, within tnaA at 872.002 kb on + strand, within tnaA at 872.002 kb on + strand, within tnaA at 872.078 kb on + strand, within tnaA at 872.078 kb on + strand, within tnaA at 872.078 kb on + strand, within tnaA at 872.079 kb on - strand, within tnaA at 872.079 kb on - strand, within tnaA at 872.127 kb on - strand, within tnaA at 872.127 kb on - strand, within tnaA at 872.166 kb on + strand, within tnaA at 872.220 kb on + strand, within tnaA at 872.220 kb on + strand, within tnaA at 872.221 kb on - strand, within tnaA at 872.225 kb on + strand, within tnaA at 872.225 kb on + strand, within tnaA at 872.226 kb on - strand, within tnaA at 872.364 kb on - strand, within tnaA at 872.364 kb on - strand, within tnaA at 872.365 kb on + strand, within tnaA at 872.365 kb on + strand, within tnaA at 872.365 kb on + strand, within tnaA at 872.486 kb on + strand at 872.487 kb on - strand at 872.487 kb on - strand at 872.487 kb on - strand at 872.488 kb on + strand at 872.500 kb on + strand at 872.501 kb on - strand at 872.513 kb on - strand at 872.629 kb on - strand at 872.643 kb on - strand at 872.671 kb on - strand at 872.766 kb on + strand at 872.767 kb on - strand at 872.792 kb on - strand at 872.792 kb on - strand at 872.792 kb on - strand at 872.975 kb on - strand, within tnaB at 872.975 kb on - strand, within tnaB at 873.005 kb on + strand, within tnaB at 873.005 kb on + strand, within tnaB at 873.006 kb on - strand, within tnaB at 873.017 kb on + strand, within tnaB at 873.018 kb on - strand, within tnaB at 873.018 kb on - strand, within tnaB at 873.023 kb on + strand, within tnaB at 873.024 kb on - strand, within tnaB at 873.025 kb on + strand, within tnaB at 873.025 kb on + strand, within tnaB at 873.026 kb on - strand, within tnaB at 873.095 kb on - strand, within tnaB at 873.132 kb on + strand, within tnaB at 873.133 kb on - strand, within tnaB at 873.284 kb on + strand, within tnaB at 873.284 kb on + strand, within tnaB at 873.285 kb on - strand, within tnaB at 873.285 kb on - strand, within tnaB at 873.294 kb on - strand, within tnaB at 873.294 kb on - strand, within tnaB at 873.295 kb on + strand, within tnaB at 873.361 kb on + strand, within tnaB at 873.385 kb on + strand, within tnaB at 873.390 kb on + strand, within tnaB at 873.406 kb on - strand, within tnaB at 873.435 kb on - strand, within tnaB at 873.435 kb on - strand, within tnaB at 873.450 kb on - strand, within tnaB at 873.466 kb on + strand, within tnaB at 873.586 kb on + strand, within tnaB at 873.591 kb on + strand, within tnaB at 873.591 kb on + strand, within tnaB at 873.591 kb on + strand, within tnaB at 873.592 kb on - strand, within tnaB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 870,514 - BNILDI_04405 0.88 -1.8 870,595 - +0.8 870,665 - -3.5 870,723 + +0.1 870,873 - -0.1 870,904 - -0.3 870,927 + tnaC BNILDI_04410 0.19 +0.1 870,928 - tnaC BNILDI_04410 0.20 +0.0 870,928 - tnaC BNILDI_04410 0.20 +0.1 870,985 + +1.1 871,124 + -1.3 871,127 - -0.2 871,127 - +0.5 871,128 + +0.5 871,130 + +0.1 871,130 + +1.5 871,130 + +0.8 871,274 - -1.0 871,393 + tnaA BNILDI_04415 0.13 -0.2 871,393 + tnaA BNILDI_04415 0.13 +0.7 871,394 - tnaA BNILDI_04415 0.13 -0.2 871,394 - tnaA BNILDI_04415 0.13 -0.2 871,394 - tnaA BNILDI_04415 0.13 -0.4 871,394 - tnaA BNILDI_04415 0.13 -0.1 871,394 - tnaA BNILDI_04415 0.13 +0.6 871,394 - tnaA BNILDI_04415 0.13 +0.5 871,394 - tnaA BNILDI_04415 0.13 -0.2 871,446 - tnaA BNILDI_04415 0.17 +0.6 871,492 + tnaA BNILDI_04415 0.20 +0.6 871,532 + tnaA BNILDI_04415 0.23 -0.4 871,608 - tnaA BNILDI_04415 0.28 +0.3 871,660 + tnaA BNILDI_04415 0.32 +0.4 871,667 + tnaA BNILDI_04415 0.32 -0.8 871,667 + tnaA BNILDI_04415 0.32 +0.5 871,668 - tnaA BNILDI_04415 0.32 -0.2 871,668 - tnaA BNILDI_04415 0.32 -0.1 871,700 + tnaA BNILDI_04415 0.35 -1.4 871,735 - tnaA BNILDI_04415 0.37 +1.2 871,735 - tnaA BNILDI_04415 0.37 -0.0 871,775 + tnaA BNILDI_04415 0.40 -2.7 871,775 + tnaA BNILDI_04415 0.40 +0.2 871,776 - tnaA BNILDI_04415 0.40 -1.1 871,776 - tnaA BNILDI_04415 0.40 +0.1 871,776 - tnaA BNILDI_04415 0.40 +0.3 871,776 - tnaA BNILDI_04415 0.40 +0.8 871,798 + tnaA BNILDI_04415 0.42 +0.0 871,847 + tnaA BNILDI_04415 0.45 -0.0 871,865 + tnaA BNILDI_04415 0.46 +2.0 871,865 + tnaA BNILDI_04415 0.46 +0.7 871,865 + tnaA BNILDI_04415 0.46 -0.1 871,865 + tnaA BNILDI_04415 0.46 -0.3 871,871 - tnaA BNILDI_04415 0.47 -0.0 871,881 + tnaA BNILDI_04415 0.48 +0.7 871,940 + tnaA BNILDI_04415 0.52 +0.6 871,941 - tnaA BNILDI_04415 0.52 +0.3 871,986 - tnaA BNILDI_04415 0.55 -0.0 871,986 - tnaA BNILDI_04415 0.55 +1.0 871,986 - tnaA BNILDI_04415 0.55 -0.6 872,002 + tnaA BNILDI_04415 0.56 -0.6 872,002 + tnaA BNILDI_04415 0.56 +0.2 872,078 + tnaA BNILDI_04415 0.61 -0.7 872,078 + tnaA BNILDI_04415 0.61 +0.8 872,078 + tnaA BNILDI_04415 0.61 -1.2 872,079 - tnaA BNILDI_04415 0.62 +0.4 872,079 - tnaA BNILDI_04415 0.62 +0.0 872,127 - tnaA BNILDI_04415 0.65 -0.4 872,127 - tnaA BNILDI_04415 0.65 -0.2 872,166 + tnaA BNILDI_04415 0.68 -0.3 872,220 + tnaA BNILDI_04415 0.71 +0.1 872,220 + tnaA BNILDI_04415 0.71 +0.0 872,221 - tnaA BNILDI_04415 0.72 +0.4 872,225 + tnaA BNILDI_04415 0.72 +0.1 872,225 + tnaA BNILDI_04415 0.72 +0.9 872,226 - tnaA BNILDI_04415 0.72 +0.2 872,364 - tnaA BNILDI_04415 0.82 +0.2 872,364 - tnaA BNILDI_04415 0.82 +0.2 872,365 + tnaA BNILDI_04415 0.82 +1.3 872,365 + tnaA BNILDI_04415 0.82 +0.2 872,365 + tnaA BNILDI_04415 0.82 +0.2 872,486 + -2.0 872,487 - -0.3 872,487 - -1.2 872,487 - -0.3 872,488 + +0.9 872,500 + -0.1 872,501 - -0.1 872,513 - -0.8 872,629 - +0.3 872,643 - -0.2 872,671 - +1.5 872,766 + -0.9 872,767 - -0.8 872,792 - -0.3 872,792 - -0.5 872,792 - -0.6 872,975 - tnaB BNILDI_04420 0.21 +0.4 872,975 - tnaB BNILDI_04420 0.21 +0.3 873,005 + tnaB BNILDI_04420 0.23 -0.1 873,005 + tnaB BNILDI_04420 0.23 +0.5 873,006 - tnaB BNILDI_04420 0.23 +0.6 873,017 + tnaB BNILDI_04420 0.24 -2.6 873,018 - tnaB BNILDI_04420 0.24 +0.3 873,018 - tnaB BNILDI_04420 0.24 +0.7 873,023 + tnaB BNILDI_04420 0.25 -1.4 873,024 - tnaB BNILDI_04420 0.25 -0.5 873,025 + tnaB BNILDI_04420 0.25 +0.2 873,025 + tnaB BNILDI_04420 0.25 -0.5 873,026 - tnaB BNILDI_04420 0.25 +0.5 873,095 - tnaB BNILDI_04420 0.31 -0.1 873,132 + tnaB BNILDI_04420 0.33 -0.9 873,133 - tnaB BNILDI_04420 0.34 +0.3 873,284 + tnaB BNILDI_04420 0.46 -0.9 873,284 + tnaB BNILDI_04420 0.46 +0.7 873,285 - tnaB BNILDI_04420 0.46 +1.2 873,285 - tnaB BNILDI_04420 0.46 -0.4 873,294 - tnaB BNILDI_04420 0.46 +0.3 873,294 - tnaB BNILDI_04420 0.46 -1.2 873,295 + tnaB BNILDI_04420 0.47 +0.8 873,361 + tnaB BNILDI_04420 0.52 +0.1 873,385 + tnaB BNILDI_04420 0.54 -0.1 873,390 + tnaB BNILDI_04420 0.54 +1.7 873,406 - tnaB BNILDI_04420 0.55 -0.2 873,435 - tnaB BNILDI_04420 0.58 -1.2 873,435 - tnaB BNILDI_04420 0.58 -2.3 873,450 - tnaB BNILDI_04420 0.59 -0.9 873,466 + tnaB BNILDI_04420 0.60 +0.1 873,586 + tnaB BNILDI_04420 0.70 +0.0 873,591 + tnaB BNILDI_04420 0.70 +0.3 873,591 + tnaB BNILDI_04420 0.70 -0.1 873,591 + tnaB BNILDI_04420 0.70 -0.1 873,592 - tnaB BNILDI_04420 0.70 +0.1
Or see this region's nucleotide sequence