Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt emrD and BNILDI_04230 are separated by 7 nucleotides BNILDI_04230 and yidG overlap by 4 nucleotides yidG and yidH overlap by 11 nucleotides yidH and yidI are separated by 109 nucleotides yidI and yidJ are separated by 46 nucleotides
BNILDI_04225: emrD - multidrug efflux MFS transporter EmrD, at 836,397 to 837,581
emrD
BNILDI_04230: BNILDI_04230 - Anaerobic sulfatase-maturating enzyme, at 837,589 to 838,086
_04230
BNILDI_04235: yidG - Inner membrane protein YidG, at 838,083 to 838,445
yidG
BNILDI_04240: yidH - Inner membrane protein YidH, at 838,435 to 838,782
yidH
BNILDI_04245: yidI - Inner membrane protein YidI, at 838,892 to 839,341
yidI
BNILDI_04250: yidJ - Uncharacterized sulfatase YidJ, at 839,388 to 840,881
yidJ
Position (kb) 838
839 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 837.657 kb on + strand, within BNILDI_04230 at 837.808 kb on + strand, within BNILDI_04230 at 837.838 kb on - strand, within BNILDI_04230 at 837.846 kb on + strand, within BNILDI_04230 at 837.847 kb on - strand, within BNILDI_04230 at 837.951 kb on - strand, within BNILDI_04230 at 838.033 kb on + strand, within BNILDI_04230 at 838.034 kb on - strand, within BNILDI_04230 at 838.101 kb on - strand at 838.101 kb on - strand at 838.105 kb on - strand at 838.109 kb on + strand at 838.119 kb on + strand at 838.119 kb on + strand at 838.121 kb on + strand, within yidG at 838.152 kb on + strand, within yidG at 838.188 kb on + strand, within yidG at 838.227 kb on + strand, within yidG at 838.228 kb on - strand, within yidG at 838.247 kb on - strand, within yidG at 838.299 kb on + strand, within yidG at 838.299 kb on + strand, within yidG at 838.300 kb on - strand, within yidG at 838.300 kb on - strand, within yidG at 838.300 kb on - strand, within yidG at 838.368 kb on - strand, within yidG at 838.446 kb on - strand at 838.495 kb on - strand, within yidH at 838.495 kb on - strand, within yidH at 838.577 kb on + strand, within yidH at 838.577 kb on + strand, within yidH at 838.577 kb on + strand, within yidH at 838.577 kb on + strand, within yidH at 838.577 kb on + strand, within yidH at 838.577 kb on + strand, within yidH at 838.577 kb on + strand, within yidH at 838.578 kb on - strand, within yidH at 838.694 kb on - strand, within yidH at 838.723 kb on - strand, within yidH at 838.813 kb on + strand at 838.813 kb on + strand at 838.861 kb on - strand at 838.878 kb on + strand at 838.878 kb on + strand at 838.902 kb on + strand at 838.902 kb on + strand at 838.903 kb on - strand at 838.903 kb on - strand at 838.903 kb on - strand at 838.953 kb on + strand, within yidI at 839.068 kb on - strand, within yidI at 839.109 kb on + strand, within yidI at 839.110 kb on - strand, within yidI at 839.110 kb on - strand, within yidI at 839.110 kb on - strand, within yidI at 839.110 kb on - strand, within yidI at 839.110 kb on - strand, within yidI at 839.110 kb on - strand, within yidI at 839.164 kb on - strand, within yidI at 839.164 kb on - strand, within yidI at 839.164 kb on - strand, within yidI at 839.446 kb on + strand at 839.447 kb on - strand at 839.447 kb on - strand at 839.447 kb on - strand at 839.454 kb on + strand at 839.454 kb on + strand at 839.455 kb on - strand at 839.455 kb on - strand at 839.467 kb on + strand at 839.548 kb on + strand, within yidJ at 839.581 kb on + strand, within yidJ at 839.715 kb on - strand, within yidJ at 839.779 kb on + strand, within yidJ
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 837,657 + BNILDI_04230 0.14 +0.2 837,808 + BNILDI_04230 0.44 +0.4 837,838 - BNILDI_04230 0.50 -2.4 837,846 + BNILDI_04230 0.52 +0.9 837,847 - BNILDI_04230 0.52 -0.5 837,951 - BNILDI_04230 0.73 -1.3 838,033 + BNILDI_04230 0.89 +3.4 838,034 - BNILDI_04230 0.89 -0.2 838,101 - +0.2 838,101 - +1.0 838,105 - -0.4 838,109 + -0.0 838,119 + -1.5 838,119 + +2.2 838,121 + yidG BNILDI_04235 0.10 -0.3 838,152 + yidG BNILDI_04235 0.19 -0.5 838,188 + yidG BNILDI_04235 0.29 +0.4 838,227 + yidG BNILDI_04235 0.40 -1.6 838,228 - yidG BNILDI_04235 0.40 -0.4 838,247 - yidG BNILDI_04235 0.45 +0.0 838,299 + yidG BNILDI_04235 0.60 -0.3 838,299 + yidG BNILDI_04235 0.60 +0.3 838,300 - yidG BNILDI_04235 0.60 +0.9 838,300 - yidG BNILDI_04235 0.60 -0.2 838,300 - yidG BNILDI_04235 0.60 +0.6 838,368 - yidG BNILDI_04235 0.79 -0.1 838,446 - -0.1 838,495 - yidH BNILDI_04240 0.17 +0.5 838,495 - yidH BNILDI_04240 0.17 +0.2 838,577 + yidH BNILDI_04240 0.41 -0.0 838,577 + yidH BNILDI_04240 0.41 +0.4 838,577 + yidH BNILDI_04240 0.41 +0.1 838,577 + yidH BNILDI_04240 0.41 +0.6 838,577 + yidH BNILDI_04240 0.41 -0.2 838,577 + yidH BNILDI_04240 0.41 +0.8 838,577 + yidH BNILDI_04240 0.41 +0.5 838,578 - yidH BNILDI_04240 0.41 -0.8 838,694 - yidH BNILDI_04240 0.74 +0.3 838,723 - yidH BNILDI_04240 0.83 +1.0 838,813 + -0.3 838,813 + +0.0 838,861 - -0.3 838,878 + -0.6 838,878 + +0.2 838,902 + +0.4 838,902 + +0.5 838,903 - +0.7 838,903 - -0.5 838,903 - +0.4 838,953 + yidI BNILDI_04245 0.14 -0.4 839,068 - yidI BNILDI_04245 0.39 +0.3 839,109 + yidI BNILDI_04245 0.48 +1.4 839,110 - yidI BNILDI_04245 0.48 +0.1 839,110 - yidI BNILDI_04245 0.48 +0.6 839,110 - yidI BNILDI_04245 0.48 +0.3 839,110 - yidI BNILDI_04245 0.48 +0.5 839,110 - yidI BNILDI_04245 0.48 -0.8 839,110 - yidI BNILDI_04245 0.48 -0.0 839,164 - yidI BNILDI_04245 0.60 -0.3 839,164 - yidI BNILDI_04245 0.60 -1.3 839,164 - yidI BNILDI_04245 0.60 +0.2 839,446 + +1.4 839,447 - +0.4 839,447 - -0.2 839,447 - -0.6 839,454 + +0.3 839,454 + +2.6 839,455 - +0.4 839,455 - +0.9 839,467 + -3.5 839,548 + yidJ BNILDI_04250 0.11 +0.8 839,581 + yidJ BNILDI_04250 0.13 -1.0 839,715 - yidJ BNILDI_04250 0.22 -0.8 839,779 + yidJ BNILDI_04250 0.26 +1.2
Or see this region's nucleotide sequence