Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dut and slmA are separated by 106 nucleotides slmA and pyrE are separated by 36 nucleotides pyrE and pyrL are separated by 11 nucleotides pyrL and rph are separated by 15 nucleotides rph and yicC are separated by 126 nucleotides
BNILDI_04025: dut - dUTP diphosphatase, at 795,581 to 796,039
dut
BNILDI_04030: slmA - nucleoid occlusion factor SlmA, at 796,146 to 796,742
slmA
BNILDI_04035: pyrE - Orotate phosphoribosyltransferase, at 796,779 to 797,420
pyrE
BNILDI_04040: pyrL - Putative PyrE leader peptide, at 797,432 to 797,470
pyrL
BNILDI_04045: rph - ribonuclease PH, at 797,486 to 798,202
rph
BNILDI_04050: yicC - UPF0701 protein YicC, at 798,329 to 799,192
yicC
Position (kb) 796
797
798 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 796.044 kb on + strand at 796.044 kb on + strand at 796.044 kb on + strand at 796.045 kb on - strand at 796.064 kb on + strand at 796.064 kb on + strand at 796.065 kb on - strand at 796.097 kb on - strand at 796.189 kb on + strand at 796.190 kb on - strand at 796.291 kb on - strand, within slmA at 796.358 kb on + strand, within slmA at 796.448 kb on + strand, within slmA at 796.518 kb on - strand, within slmA at 796.561 kb on + strand, within slmA at 796.596 kb on + strand, within slmA at 796.650 kb on - strand, within slmA at 796.650 kb on - strand, within slmA at 796.679 kb on + strand, within slmA at 796.680 kb on - strand, within slmA at 796.740 kb on + strand at 796.743 kb on + strand at 796.743 kb on + strand at 796.744 kb on - strand at 796.781 kb on - strand at 796.900 kb on + strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 797.052 kb on + strand, within pyrE at 797.052 kb on + strand, within pyrE at 797.061 kb on + strand, within pyrE at 797.062 kb on - strand, within pyrE at 797.073 kb on + strand, within pyrE at 797.207 kb on - strand, within pyrE at 797.300 kb on + strand, within pyrE at 797.300 kb on + strand, within pyrE at 797.324 kb on - strand, within pyrE at 797.410 kb on + strand at 797.516 kb on + strand at 797.517 kb on - strand at 797.517 kb on - strand at 797.561 kb on + strand, within rph at 797.636 kb on + strand, within rph at 797.637 kb on - strand, within rph at 797.673 kb on + strand, within rph at 797.703 kb on - strand, within rph at 797.727 kb on - strand, within rph at 797.898 kb on - strand, within rph at 797.959 kb on + strand, within rph at 797.960 kb on - strand, within rph at 798.077 kb on - strand, within rph at 798.142 kb on + strand at 798.142 kb on + strand at 798.143 kb on - strand at 798.143 kb on - strand at 798.144 kb on + strand at 798.145 kb on - strand at 798.145 kb on - strand at 798.149 kb on - strand at 798.149 kb on - strand at 798.178 kb on + strand at 798.178 kb on + strand at 798.203 kb on - strand at 798.203 kb on - strand at 798.241 kb on + strand at 798.243 kb on + strand at 798.266 kb on + strand at 798.289 kb on + strand at 798.290 kb on - strand at 798.312 kb on + strand at 798.313 kb on - strand at 798.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 796,044 + +0.6 796,044 + +0.6 796,044 + +0.4 796,045 - -1.1 796,064 + +0.1 796,064 + +1.7 796,065 - -0.6 796,097 - -0.8 796,189 + -0.1 796,190 - -0.2 796,291 - slmA BNILDI_04030 0.24 +0.4 796,358 + slmA BNILDI_04030 0.36 +0.2 796,448 + slmA BNILDI_04030 0.51 -0.2 796,518 - slmA BNILDI_04030 0.62 -0.9 796,561 + slmA BNILDI_04030 0.70 +0.2 796,596 + slmA BNILDI_04030 0.75 -0.5 796,650 - slmA BNILDI_04030 0.84 -0.1 796,650 - slmA BNILDI_04030 0.84 +0.1 796,679 + slmA BNILDI_04030 0.89 +2.8 796,680 - slmA BNILDI_04030 0.89 -1.6 796,740 + -0.3 796,743 + +0.7 796,743 + -0.9 796,744 - -1.1 796,781 - -0.1 796,900 + pyrE BNILDI_04035 0.19 -3.4 796,901 - pyrE BNILDI_04035 0.19 -3.2 796,901 - pyrE BNILDI_04035 0.19 -2.3 796,901 - pyrE BNILDI_04035 0.19 -3.5 796,901 - pyrE BNILDI_04035 0.19 -4.2 796,901 - pyrE BNILDI_04035 0.19 -1.7 796,901 - pyrE BNILDI_04035 0.19 -0.9 797,052 + pyrE BNILDI_04035 0.43 -3.1 797,052 + pyrE BNILDI_04035 0.43 -1.7 797,061 + pyrE BNILDI_04035 0.44 -1.2 797,062 - pyrE BNILDI_04035 0.44 -2.6 797,073 + pyrE BNILDI_04035 0.46 -2.1 797,207 - pyrE BNILDI_04035 0.67 -5.2 797,300 + pyrE BNILDI_04035 0.81 -1.8 797,300 + pyrE BNILDI_04035 0.81 -3.9 797,324 - pyrE BNILDI_04035 0.85 -2.9 797,410 + -2.9 797,516 + -2.7 797,517 - +1.3 797,517 - -0.4 797,561 + rph BNILDI_04045 0.10 +0.6 797,636 + rph BNILDI_04045 0.21 -0.9 797,637 - rph BNILDI_04045 0.21 +0.0 797,673 + rph BNILDI_04045 0.26 +0.8 797,703 - rph BNILDI_04045 0.30 +1.0 797,727 - rph BNILDI_04045 0.34 -1.7 797,898 - rph BNILDI_04045 0.57 +0.8 797,959 + rph BNILDI_04045 0.66 -0.6 797,960 - rph BNILDI_04045 0.66 +0.1 798,077 - rph BNILDI_04045 0.82 +0.8 798,142 + -1.2 798,142 + -1.7 798,143 - +0.9 798,143 - -0.2 798,144 + +0.1 798,145 - +0.7 798,145 - +0.3 798,149 - -0.2 798,149 - -0.7 798,178 + -0.0 798,178 + -1.7 798,203 - -0.1 798,203 - -0.7 798,241 + -0.5 798,243 + +0.1 798,266 + +0.4 798,289 + +0.4 798,290 - +0.2 798,312 + +0.6 798,313 - +0.4 798,328 + +0.1
Or see this region's nucleotide sequence