Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ehaG and lldP are separated by 368 nucleotides lldP and lldR overlap by 1 nucleotides lldR and lldD overlap by 4 nucleotides
BNILDI_03850: ehaG - trimeric autotransporter adhesin EhaG, at 757,040 to 761,890
ehaG
BNILDI_03855: lldP - L-lactate permease, at 762,259 to 763,914
lldP
BNILDI_03860: lldR - transcriptional regulator LldR, at 763,914 to 764,690
lldR
BNILDI_03865: lldD - quinone-dependent L-lactate dehydrogenase, at 764,687 to 765,877
lldD
Position (kb) 762
763
764 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 761.299 kb on + strand, within ehaG at 761.347 kb on + strand, within ehaG at 761.347 kb on + strand, within ehaG at 761.348 kb on - strand, within ehaG at 761.374 kb on - strand, within ehaG at 761.479 kb on + strand at 761.480 kb on - strand at 761.480 kb on - strand at 761.480 kb on - strand at 761.485 kb on + strand at 761.486 kb on - strand at 761.521 kb on + strand at 761.568 kb on - strand at 761.606 kb on + strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.715 kb on - strand at 761.716 kb on + strand at 761.740 kb on + strand at 761.756 kb on + strand at 761.756 kb on + strand at 761.757 kb on - strand at 761.781 kb on + strand at 761.833 kb on + strand at 761.833 kb on + strand at 761.833 kb on + strand at 761.834 kb on - strand at 761.834 kb on - strand at 761.836 kb on + strand at 761.836 kb on + strand at 761.837 kb on - strand at 761.904 kb on + strand at 762.021 kb on + strand at 762.068 kb on + strand at 762.098 kb on + strand at 762.099 kb on - strand at 762.281 kb on - strand at 762.298 kb on - strand at 762.358 kb on - strand at 762.376 kb on + strand at 762.481 kb on + strand, within lldP at 762.531 kb on + strand, within lldP at 762.532 kb on - strand, within lldP at 762.532 kb on - strand, within lldP at 762.577 kb on - strand, within lldP at 762.807 kb on - strand, within lldP at 762.862 kb on - strand, within lldP at 762.862 kb on - strand, within lldP at 762.974 kb on - strand, within lldP at 762.978 kb on + strand, within lldP at 763.014 kb on + strand, within lldP at 763.015 kb on - strand, within lldP at 763.015 kb on - strand, within lldP at 763.157 kb on + strand, within lldP at 763.158 kb on - strand, within lldP at 763.158 kb on - strand, within lldP at 763.158 kb on - strand, within lldP at 763.252 kb on + strand, within lldP at 763.305 kb on + strand, within lldP at 763.330 kb on - strand, within lldP at 763.486 kb on + strand, within lldP at 763.639 kb on - strand, within lldP at 763.725 kb on + strand, within lldP at 763.767 kb on + strand at 763.791 kb on - strand at 763.827 kb on + strand at 763.828 kb on - strand at 763.888 kb on + strand at 763.888 kb on + strand at 764.049 kb on - strand, within lldR at 764.390 kb on + strand, within lldR at 764.390 kb on + strand, within lldR at 764.391 kb on - strand, within lldR at 764.391 kb on - strand, within lldR at 764.453 kb on + strand, within lldR at 764.469 kb on + strand, within lldR at 764.469 kb on + strand, within lldR at 764.470 kb on - strand, within lldR at 764.580 kb on - strand, within lldR at 764.661 kb on + strand at 764.661 kb on + strand at 764.662 kb on - strand at 764.693 kb on - strand at 764.693 kb on - strand at 764.756 kb on + strand at 764.757 kb on - strand at 764.757 kb on - strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.759 kb on - strand at 764.774 kb on + strand at 764.775 kb on - strand at 764.859 kb on + strand, within lldD
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 761,299 + ehaG BNILDI_03850 0.88 +0.1 761,347 + ehaG BNILDI_03850 0.89 -0.1 761,347 + ehaG BNILDI_03850 0.89 +0.3 761,348 - ehaG BNILDI_03850 0.89 +0.3 761,374 - ehaG BNILDI_03850 0.89 -0.0 761,479 + +0.9 761,480 - +0.2 761,480 - +0.3 761,480 - -0.4 761,485 + +0.7 761,486 - +0.1 761,521 + +1.4 761,568 - +0.1 761,606 + -0.4 761,714 + -0.2 761,714 + -1.7 761,714 + +0.7 761,715 - +0.0 761,716 + +0.2 761,740 + +0.6 761,756 + -0.7 761,756 + -0.0 761,757 - -0.3 761,781 + -0.2 761,833 + -0.6 761,833 + +1.1 761,833 + -0.2 761,834 - +1.6 761,834 - +0.0 761,836 + -0.1 761,836 + -0.5 761,837 - +0.3 761,904 + -2.8 762,021 + -0.5 762,068 + -2.2 762,098 + -3.0 762,099 - -1.7 762,281 - -3.5 762,298 - -0.8 762,358 - -2.9 762,376 + -1.4 762,481 + lldP BNILDI_03855 0.13 -3.5 762,531 + lldP BNILDI_03855 0.16 -2.5 762,532 - lldP BNILDI_03855 0.16 -2.7 762,532 - lldP BNILDI_03855 0.16 -1.3 762,577 - lldP BNILDI_03855 0.19 -2.7 762,807 - lldP BNILDI_03855 0.33 -2.5 762,862 - lldP BNILDI_03855 0.36 -2.1 762,862 - lldP BNILDI_03855 0.36 -2.9 762,974 - lldP BNILDI_03855 0.43 -3.7 762,978 + lldP BNILDI_03855 0.43 -3.3 763,014 + lldP BNILDI_03855 0.46 -2.4 763,015 - lldP BNILDI_03855 0.46 -2.8 763,015 - lldP BNILDI_03855 0.46 -2.2 763,157 + lldP BNILDI_03855 0.54 -0.5 763,158 - lldP BNILDI_03855 0.54 -4.0 763,158 - lldP BNILDI_03855 0.54 -2.1 763,158 - lldP BNILDI_03855 0.54 -4.7 763,252 + lldP BNILDI_03855 0.60 -2.5 763,305 + lldP BNILDI_03855 0.63 -2.5 763,330 - lldP BNILDI_03855 0.65 -2.0 763,486 + lldP BNILDI_03855 0.74 -3.0 763,639 - lldP BNILDI_03855 0.83 -3.7 763,725 + lldP BNILDI_03855 0.89 -2.3 763,767 + -2.7 763,791 - -2.4 763,827 + -1.4 763,828 - -2.3 763,888 + -3.4 763,888 + -2.1 764,049 - lldR BNILDI_03860 0.17 -2.1 764,390 + lldR BNILDI_03860 0.61 -2.2 764,390 + lldR BNILDI_03860 0.61 -1.0 764,391 - lldR BNILDI_03860 0.61 -1.9 764,391 - lldR BNILDI_03860 0.61 -0.8 764,453 + lldR BNILDI_03860 0.69 -2.3 764,469 + lldR BNILDI_03860 0.71 -3.8 764,469 + lldR BNILDI_03860 0.71 -1.7 764,470 - lldR BNILDI_03860 0.72 -2.1 764,580 - lldR BNILDI_03860 0.86 -3.0 764,661 + +0.2 764,661 + -1.3 764,662 - -0.7 764,693 - -0.5 764,693 - -1.0 764,756 + -0.5 764,757 - -1.2 764,757 - +0.1 764,758 + -1.0 764,758 + -1.3 764,759 - -0.9 764,774 + -2.3 764,775 - -0.8 764,859 + lldD BNILDI_03865 0.14 -0.7
Or see this region's nucleotide sequence