Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaD and sgbU overlap by 8 nucleotides sgbU and araD overlap by 7 nucleotides araD and yiaT are separated by 346 nucleotides
BNILDI_03735: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 729,209 to 729,871
ulaD
BNILDI_03740: sgbU - Putative L-ribulose-5-phosphate 3-epimerase SgbU, at 729,864 to 730,724
sgbU
BNILDI_03745: araD - L-ribulose-5-phosphate 4-epimerase, at 730,718 to 731,413
araD
BNILDI_03750: yiaT - Putative outer membrane protein YiaT, at 731,760 to 732,500
yiaT
Position (kb) 730
731
732 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 729.755 kb on - strand, within ulaD at 729.755 kb on - strand, within ulaD at 729.848 kb on - strand at 729.869 kb on + strand at 729.870 kb on - strand at 729.889 kb on - strand at 730.221 kb on + strand, within sgbU at 730.221 kb on + strand, within sgbU at 730.306 kb on + strand, within sgbU at 730.306 kb on + strand, within sgbU at 730.306 kb on + strand, within sgbU at 730.307 kb on - strand, within sgbU at 730.307 kb on - strand, within sgbU at 730.341 kb on - strand, within sgbU at 730.606 kb on - strand, within sgbU at 730.715 kb on + strand at 730.715 kb on + strand at 730.716 kb on - strand at 730.717 kb on + strand at 730.717 kb on + strand at 730.718 kb on - strand at 730.722 kb on + strand at 730.723 kb on - strand at 730.836 kb on + strand, within araD at 730.900 kb on - strand, within araD at 730.909 kb on + strand, within araD at 730.924 kb on + strand, within araD at 731.085 kb on - strand, within araD at 731.139 kb on - strand, within araD at 731.144 kb on + strand, within araD at 731.300 kb on + strand, within araD at 731.301 kb on - strand, within araD at 731.301 kb on - strand, within araD at 731.372 kb on + strand at 731.372 kb on + strand at 731.373 kb on - strand at 731.380 kb on + strand at 731.399 kb on + strand at 731.400 kb on - strand at 731.400 kb on - strand at 731.447 kb on - strand at 731.457 kb on - strand at 731.531 kb on - strand at 731.550 kb on + strand at 731.589 kb on - strand at 731.651 kb on + strand at 731.792 kb on + strand at 731.792 kb on + strand at 731.805 kb on - strand at 731.872 kb on - strand, within yiaT at 731.872 kb on - strand, within yiaT at 731.874 kb on + strand, within yiaT at 731.874 kb on + strand, within yiaT at 731.874 kb on + strand, within yiaT at 731.874 kb on + strand, within yiaT at 731.874 kb on + strand, within yiaT at 731.875 kb on - strand, within yiaT at 731.875 kb on - strand, within yiaT at 731.875 kb on - strand, within yiaT at 731.875 kb on - strand, within yiaT at 731.915 kb on - strand, within yiaT at 731.986 kb on + strand, within yiaT at 731.986 kb on + strand, within yiaT at 731.989 kb on + strand, within yiaT at 731.990 kb on - strand, within yiaT at 731.990 kb on - strand, within yiaT at 731.990 kb on - strand, within yiaT at 731.990 kb on - strand, within yiaT at 731.992 kb on + strand, within yiaT at 731.992 kb on + strand, within yiaT at 731.993 kb on - strand, within yiaT at 732.016 kb on + strand, within yiaT at 732.016 kb on + strand, within yiaT at 732.055 kb on - strand, within yiaT at 732.189 kb on - strand, within yiaT at 732.189 kb on - strand, within yiaT at 732.303 kb on - strand, within yiaT at 732.346 kb on + strand, within yiaT
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 729,755 - ulaD BNILDI_03735 0.82 -3.1 729,755 - ulaD BNILDI_03735 0.82 -0.7 729,848 - +0.1 729,869 + -0.4 729,870 - +0.7 729,889 - +1.0 730,221 + sgbU BNILDI_03740 0.41 +0.8 730,221 + sgbU BNILDI_03740 0.41 +1.8 730,306 + sgbU BNILDI_03740 0.51 +0.2 730,306 + sgbU BNILDI_03740 0.51 +0.1 730,306 + sgbU BNILDI_03740 0.51 +0.9 730,307 - sgbU BNILDI_03740 0.51 +0.1 730,307 - sgbU BNILDI_03740 0.51 -0.6 730,341 - sgbU BNILDI_03740 0.55 -0.1 730,606 - sgbU BNILDI_03740 0.86 +0.3 730,715 + -0.1 730,715 + -3.8 730,716 - -0.3 730,717 + -0.6 730,717 + -0.1 730,718 - -1.7 730,722 + -0.3 730,723 - -1.3 730,836 + araD BNILDI_03745 0.17 -0.5 730,900 - araD BNILDI_03745 0.26 -0.5 730,909 + araD BNILDI_03745 0.27 +0.3 730,924 + araD BNILDI_03745 0.30 -0.0 731,085 - araD BNILDI_03745 0.53 +0.3 731,139 - araD BNILDI_03745 0.60 -0.7 731,144 + araD BNILDI_03745 0.61 +0.1 731,300 + araD BNILDI_03745 0.84 -0.3 731,301 - araD BNILDI_03745 0.84 +0.2 731,301 - araD BNILDI_03745 0.84 +0.3 731,372 + -1.1 731,372 + +0.3 731,373 - +0.2 731,380 + -0.5 731,399 + -0.1 731,400 - +0.7 731,400 - +0.4 731,447 - -0.4 731,457 - -1.0 731,531 - -0.2 731,550 + +0.5 731,589 - -0.6 731,651 + +0.1 731,792 + +0.2 731,792 + -1.2 731,805 - +0.0 731,872 - yiaT BNILDI_03750 0.15 -0.2 731,872 - yiaT BNILDI_03750 0.15 +1.0 731,874 + yiaT BNILDI_03750 0.15 +0.6 731,874 + yiaT BNILDI_03750 0.15 +0.5 731,874 + yiaT BNILDI_03750 0.15 +0.0 731,874 + yiaT BNILDI_03750 0.15 +0.9 731,874 + yiaT BNILDI_03750 0.15 -0.4 731,875 - yiaT BNILDI_03750 0.16 -0.9 731,875 - yiaT BNILDI_03750 0.16 -3.1 731,875 - yiaT BNILDI_03750 0.16 +1.0 731,875 - yiaT BNILDI_03750 0.16 -0.6 731,915 - yiaT BNILDI_03750 0.21 -0.1 731,986 + yiaT BNILDI_03750 0.30 +1.3 731,986 + yiaT BNILDI_03750 0.30 -0.2 731,989 + yiaT BNILDI_03750 0.31 -0.5 731,990 - yiaT BNILDI_03750 0.31 +0.8 731,990 - yiaT BNILDI_03750 0.31 -0.3 731,990 - yiaT BNILDI_03750 0.31 +0.3 731,990 - yiaT BNILDI_03750 0.31 +0.7 731,992 + yiaT BNILDI_03750 0.31 -1.4 731,992 + yiaT BNILDI_03750 0.31 +0.2 731,993 - yiaT BNILDI_03750 0.31 +1.4 732,016 + yiaT BNILDI_03750 0.35 +0.2 732,016 + yiaT BNILDI_03750 0.35 -0.2 732,055 - yiaT BNILDI_03750 0.40 -0.7 732,189 - yiaT BNILDI_03750 0.58 +0.3 732,189 - yiaT BNILDI_03750 0.58 -0.5 732,303 - yiaT BNILDI_03750 0.73 +0.0 732,346 + yiaT BNILDI_03750 0.79 +1.3
Or see this region's nucleotide sequence