Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiaF and yiaG are separated by 433 nucleotides yiaG and cspA are separated by 280 nucleotides cspA and hokA are separated by 187 nucleotides
BNILDI_03585: yiaF - Uncharacterized protein YiaF, at 700,455 to 701,165
yiaF
BNILDI_03590: yiaG - HTH-type transcriptional regulator, at 701,599 to 701,889
yiaG
BNILDI_03595: cspA - Major cold shock protein, at 702,170 to 702,382
cspA
BNILDI_03600: hokA - type I toxin-antitoxin system toxin HokA, at 702,570 to 702,782
hokA
Position (kb) 701
702 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 700.615 kb on + strand, within yiaF at 700.615 kb on + strand, within yiaF at 700.615 kb on + strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.750 kb on - strand, within yiaF at 701.010 kb on + strand, within yiaF at 701.036 kb on + strand, within yiaF at 701.106 kb on + strand at 701.107 kb on - strand at 701.112 kb on + strand at 701.113 kb on - strand at 701.262 kb on - strand at 701.262 kb on - strand at 701.265 kb on + strand at 701.266 kb on - strand at 701.366 kb on + strand at 701.366 kb on + strand at 701.384 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.425 kb on - strand at 701.448 kb on - strand at 701.457 kb on + strand at 701.541 kb on - strand at 701.607 kb on + strand at 701.720 kb on + strand, within yiaG at 701.832 kb on - strand, within yiaG at 701.914 kb on + strand at 701.946 kb on + strand at 701.947 kb on - strand at 701.949 kb on + strand at 702.022 kb on + strand at 702.042 kb on + strand at 702.042 kb on + strand at 702.042 kb on + strand at 702.043 kb on - strand at 702.152 kb on + strand at 702.153 kb on - strand at 702.161 kb on + strand at 702.162 kb on - strand at 702.169 kb on + strand at 702.169 kb on + strand at 702.169 kb on + strand at 702.169 kb on + strand at 702.169 kb on + strand at 702.169 kb on + strand at 702.170 kb on - strand at 702.170 kb on - strand at 702.170 kb on - strand at 702.195 kb on + strand, within cspA at 702.264 kb on + strand, within cspA at 702.392 kb on - strand at 702.482 kb on - strand at 702.482 kb on - strand at 702.487 kb on + strand at 702.627 kb on - strand, within hokA at 702.754 kb on - strand, within hokA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 700,615 + yiaF BNILDI_03585 0.23 +0.0 700,615 + yiaF BNILDI_03585 0.23 -1.5 700,615 + yiaF BNILDI_03585 0.23 -0.3 700,616 - yiaF BNILDI_03585 0.23 +0.1 700,616 - yiaF BNILDI_03585 0.23 -0.8 700,616 - yiaF BNILDI_03585 0.23 -1.1 700,616 - yiaF BNILDI_03585 0.23 +0.1 700,750 - yiaF BNILDI_03585 0.41 -0.1 701,010 + yiaF BNILDI_03585 0.78 +0.6 701,036 + yiaF BNILDI_03585 0.82 +0.2 701,106 + +0.0 701,107 - -0.5 701,112 + +2.1 701,113 - +0.2 701,262 - -0.3 701,262 - -1.4 701,265 + -0.3 701,266 - +0.3 701,366 + -0.4 701,366 + -0.2 701,384 + -4.1 701,424 + -0.4 701,424 + +0.7 701,424 + -0.3 701,424 + +0.4 701,424 + -0.5 701,425 - -0.9 701,448 - +0.0 701,457 + +0.3 701,541 - +1.5 701,607 + +1.2 701,720 + yiaG BNILDI_03590 0.42 -1.0 701,832 - yiaG BNILDI_03590 0.80 +2.1 701,914 + -2.4 701,946 + +0.0 701,947 - +0.2 701,949 + +1.1 702,022 + -2.5 702,042 + -2.2 702,042 + -0.7 702,042 + -2.6 702,043 - -0.0 702,152 + +0.3 702,153 - +1.1 702,161 + -0.9 702,162 - -0.3 702,169 + -0.0 702,169 + +1.1 702,169 + +0.3 702,169 + +0.9 702,169 + -0.3 702,169 + +0.7 702,170 - -0.5 702,170 - +0.5 702,170 - +1.0 702,195 + cspA BNILDI_03595 0.12 +1.6 702,264 + cspA BNILDI_03595 0.44 -0.8 702,392 - +0.0 702,482 - +0.6 702,482 - -0.5 702,487 + +0.5 702,627 - hokA BNILDI_03600 0.27 -0.2 702,754 - hokA BNILDI_03600 0.86 -0.6
Or see this region's nucleotide sequence