Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dppF and dppD overlap by 4 nucleotides dppD and dppC are separated by 10 nucleotides dppC and dppB are separated by 9 nucleotides
BNILDI_03495: dppF - dipeptide ABC transporter ATP-binding subunit DppF, at 682,536 to 683,540
dppF
BNILDI_03500: dppD - dipeptide ABC transporter ATP-binding protein, at 683,537 to 684,520
dppD
BNILDI_03505: dppC - dipeptide ABC transporter permease DppC, at 684,531 to 685,433
dppC
BNILDI_03510: dppB - dipeptide ABC transporter permease DppB, at 685,443 to 686,462
dppB
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1 at 683.535 kb on - strand at 683.540 kb on + strand at 683.540 kb on + strand at 683.541 kb on - strand at 683.541 kb on - strand at 683.605 kb on + strand at 683.605 kb on + strand at 683.606 kb on - strand at 683.688 kb on + strand, within dppD at 683.774 kb on - strand, within dppD at 683.774 kb on - strand, within dppD at 683.775 kb on + strand, within dppD at 683.838 kb on + strand, within dppD at 683.838 kb on + strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.854 kb on + strand, within dppD at 683.855 kb on - strand, within dppD at 683.890 kb on + strand, within dppD at 683.890 kb on + strand, within dppD at 683.894 kb on + strand, within dppD at 683.936 kb on + strand, within dppD at 684.289 kb on + strand, within dppD at 684.290 kb on - strand, within dppD at 684.290 kb on - strand, within dppD at 684.438 kb on + strand at 684.500 kb on - strand at 684.509 kb on + strand at 684.509 kb on + strand at 684.533 kb on - strand at 684.533 kb on - strand at 684.810 kb on - strand, within dppC at 684.860 kb on - strand, within dppC at 684.907 kb on + strand, within dppC at 685.091 kb on + strand, within dppC at 685.110 kb on + strand, within dppC at 685.147 kb on + strand, within dppC at 685.147 kb on + strand, within dppC at 685.270 kb on + strand, within dppC at 685.271 kb on - strand, within dppC at 685.271 kb on - strand, within dppC at 685.322 kb on - strand, within dppC at 685.322 kb on - strand, within dppC at 685.534 kb on - strand at 685.756 kb on + strand, within dppB at 685.756 kb on + strand, within dppB at 685.757 kb on - strand, within dppB at 685.757 kb on - strand, within dppB at 685.796 kb on + strand, within dppB at 685.850 kb on + strand, within dppB at 685.851 kb on - strand, within dppB at 685.868 kb on + strand, within dppB at 685.868 kb on + strand, within dppB at 685.911 kb on - strand, within dppB at 686.199 kb on + strand, within dppB at 686.230 kb on - strand, within dppB at 686.230 kb on - strand, within dppB at 686.244 kb on + strand, within dppB at 686.257 kb on + strand, within dppB at 686.258 kb on - strand, within dppB at 686.285 kb on + strand, within dppB at 686.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 683,535 - +0.4 683,540 + -0.8 683,540 + -1.9 683,541 - +0.5 683,541 - -0.4 683,605 + +0.2 683,605 + +0.3 683,606 - +1.1 683,688 + dppD BNILDI_03500 0.15 +0.1 683,774 - dppD BNILDI_03500 0.24 -0.4 683,774 - dppD BNILDI_03500 0.24 +0.7 683,775 + dppD BNILDI_03500 0.24 -0.1 683,838 + dppD BNILDI_03500 0.31 -0.1 683,838 + dppD BNILDI_03500 0.31 -0.2 683,839 - dppD BNILDI_03500 0.31 -1.1 683,839 - dppD BNILDI_03500 0.31 -0.1 683,839 - dppD BNILDI_03500 0.31 +0.3 683,839 - dppD BNILDI_03500 0.31 +0.1 683,839 - dppD BNILDI_03500 0.31 +0.6 683,854 + dppD BNILDI_03500 0.32 -0.7 683,855 - dppD BNILDI_03500 0.32 -0.0 683,890 + dppD BNILDI_03500 0.36 +0.1 683,890 + dppD BNILDI_03500 0.36 -0.6 683,894 + dppD BNILDI_03500 0.36 +0.5 683,936 + dppD BNILDI_03500 0.41 -0.6 684,289 + dppD BNILDI_03500 0.76 -0.4 684,290 - dppD BNILDI_03500 0.77 -0.1 684,290 - dppD BNILDI_03500 0.77 -0.3 684,438 + -0.8 684,500 - -1.5 684,509 + -0.7 684,509 + -0.0 684,533 - +0.5 684,533 - +0.1 684,810 - dppC BNILDI_03505 0.31 -0.9 684,860 - dppC BNILDI_03505 0.36 -0.8 684,907 + dppC BNILDI_03505 0.42 -2.0 685,091 + dppC BNILDI_03505 0.62 -0.1 685,110 + dppC BNILDI_03505 0.64 -0.8 685,147 + dppC BNILDI_03505 0.68 -0.4 685,147 + dppC BNILDI_03505 0.68 +0.6 685,270 + dppC BNILDI_03505 0.82 +0.4 685,271 - dppC BNILDI_03505 0.82 +0.2 685,271 - dppC BNILDI_03505 0.82 -0.6 685,322 - dppC BNILDI_03505 0.88 +0.6 685,322 - dppC BNILDI_03505 0.88 -0.1 685,534 - +0.2 685,756 + dppB BNILDI_03510 0.31 +0.9 685,756 + dppB BNILDI_03510 0.31 +0.4 685,757 - dppB BNILDI_03510 0.31 -0.2 685,757 - dppB BNILDI_03510 0.31 +0.5 685,796 + dppB BNILDI_03510 0.35 +0.6 685,850 + dppB BNILDI_03510 0.40 +0.6 685,851 - dppB BNILDI_03510 0.40 +0.5 685,868 + dppB BNILDI_03510 0.42 -1.4 685,868 + dppB BNILDI_03510 0.42 -0.1 685,911 - dppB BNILDI_03510 0.46 +0.2 686,199 + dppB BNILDI_03510 0.74 -0.4 686,230 - dppB BNILDI_03510 0.77 -0.1 686,230 - dppB BNILDI_03510 0.77 -0.3 686,244 + dppB BNILDI_03510 0.79 +1.0 686,257 + dppB BNILDI_03510 0.80 +1.1 686,258 - dppB BNILDI_03510 0.80 +0.0 686,285 + dppB BNILDI_03510 0.83 +0.3 686,406 - +0.2
Or see this region's nucleotide sequence