Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhjV and dppF are separated by 29 nucleotides dppF and dppD overlap by 4 nucleotides dppD and dppC are separated by 10 nucleotides
BNILDI_03490: yhjV - Inner membrane transport protein YhjV, at 681,235 to 682,506
yhjV
BNILDI_03495: dppF - dipeptide ABC transporter ATP-binding subunit DppF, at 682,536 to 683,540
dppF
BNILDI_03500: dppD - dipeptide ABC transporter ATP-binding protein, at 683,537 to 684,520
dppD
BNILDI_03505: dppC - dipeptide ABC transporter permease DppC, at 684,531 to 685,433
dppC
Position (kb) 682
683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.536 kb on - strand, within yhjV at 681.654 kb on + strand, within yhjV at 681.801 kb on + strand, within yhjV at 681.801 kb on + strand, within yhjV at 681.801 kb on + strand, within yhjV at 681.802 kb on - strand, within yhjV at 681.803 kb on + strand, within yhjV at 681.850 kb on - strand, within yhjV at 681.850 kb on - strand, within yhjV at 681.882 kb on + strand, within yhjV at 681.883 kb on - strand, within yhjV at 681.894 kb on + strand, within yhjV at 681.906 kb on + strand, within yhjV at 681.918 kb on + strand, within yhjV at 681.975 kb on + strand, within yhjV at 681.976 kb on - strand, within yhjV at 681.979 kb on + strand, within yhjV at 681.981 kb on + strand, within yhjV at 681.981 kb on + strand, within yhjV at 681.982 kb on - strand, within yhjV at 682.023 kb on + strand, within yhjV at 682.071 kb on + strand, within yhjV at 682.113 kb on + strand, within yhjV at 682.113 kb on + strand, within yhjV at 682.114 kb on - strand, within yhjV at 682.143 kb on + strand, within yhjV at 682.296 kb on + strand, within yhjV at 682.296 kb on + strand, within yhjV at 682.296 kb on + strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.361 kb on + strand, within yhjV at 682.362 kb on - strand, within yhjV at 682.363 kb on + strand, within yhjV at 682.364 kb on - strand, within yhjV at 682.402 kb on + strand at 682.403 kb on - strand at 682.403 kb on - strand at 682.403 kb on - strand at 682.405 kb on - strand at 682.438 kb on - strand at 682.448 kb on + strand at 682.537 kb on + strand at 682.578 kb on + strand at 682.578 kb on + strand at 682.578 kb on + strand at 682.594 kb on + strand at 682.603 kb on - strand at 682.834 kb on + strand, within dppF at 682.835 kb on - strand, within dppF at 682.835 kb on - strand, within dppF at 682.890 kb on - strand, within dppF at 682.897 kb on + strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 683.060 kb on + strand, within dppF at 683.077 kb on + strand, within dppF at 683.077 kb on + strand, within dppF at 683.078 kb on - strand, within dppF at 683.156 kb on + strand, within dppF at 683.159 kb on + strand, within dppF at 683.159 kb on + strand, within dppF at 683.160 kb on - strand, within dppF at 683.302 kb on + strand, within dppF at 683.302 kb on + strand, within dppF at 683.302 kb on + strand, within dppF at 683.303 kb on - strand, within dppF at 683.303 kb on - strand, within dppF at 683.535 kb on - strand at 683.540 kb on + strand at 683.540 kb on + strand at 683.541 kb on - strand at 683.541 kb on - strand at 683.605 kb on + strand at 683.605 kb on + strand at 683.606 kb on - strand at 683.688 kb on + strand, within dppD at 683.774 kb on - strand, within dppD at 683.774 kb on - strand, within dppD at 683.775 kb on + strand, within dppD at 683.838 kb on + strand, within dppD at 683.838 kb on + strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.839 kb on - strand, within dppD at 683.854 kb on + strand, within dppD at 683.855 kb on - strand, within dppD at 683.890 kb on + strand, within dppD at 683.890 kb on + strand, within dppD at 683.894 kb on + strand, within dppD at 683.936 kb on + strand, within dppD at 684.289 kb on + strand, within dppD at 684.290 kb on - strand, within dppD at 684.290 kb on - strand, within dppD at 684.438 kb on + strand at 684.500 kb on - strand at 684.509 kb on + strand at 684.509 kb on + strand at 684.533 kb on - strand at 684.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 681,536 - yhjV BNILDI_03490 0.24 -0.3 681,654 + yhjV BNILDI_03490 0.33 -2.5 681,801 + yhjV BNILDI_03490 0.44 -1.0 681,801 + yhjV BNILDI_03490 0.44 -0.5 681,801 + yhjV BNILDI_03490 0.44 +0.9 681,802 - yhjV BNILDI_03490 0.45 +0.0 681,803 + yhjV BNILDI_03490 0.45 -0.0 681,850 - yhjV BNILDI_03490 0.48 +0.6 681,850 - yhjV BNILDI_03490 0.48 -0.6 681,882 + yhjV BNILDI_03490 0.51 -0.4 681,883 - yhjV BNILDI_03490 0.51 -0.6 681,894 + yhjV BNILDI_03490 0.52 -0.5 681,906 + yhjV BNILDI_03490 0.53 +0.6 681,918 + yhjV BNILDI_03490 0.54 +0.2 681,975 + yhjV BNILDI_03490 0.58 +0.2 681,976 - yhjV BNILDI_03490 0.58 -0.1 681,979 + yhjV BNILDI_03490 0.58 -0.3 681,981 + yhjV BNILDI_03490 0.59 +0.5 681,981 + yhjV BNILDI_03490 0.59 +1.1 681,982 - yhjV BNILDI_03490 0.59 -0.0 682,023 + yhjV BNILDI_03490 0.62 -0.0 682,071 + yhjV BNILDI_03490 0.66 -0.9 682,113 + yhjV BNILDI_03490 0.69 +0.9 682,113 + yhjV BNILDI_03490 0.69 +0.0 682,114 - yhjV BNILDI_03490 0.69 +0.3 682,143 + yhjV BNILDI_03490 0.71 -1.0 682,296 + yhjV BNILDI_03490 0.83 -0.7 682,296 + yhjV BNILDI_03490 0.83 +0.5 682,296 + yhjV BNILDI_03490 0.83 +0.9 682,297 - yhjV BNILDI_03490 0.83 +0.2 682,297 - yhjV BNILDI_03490 0.83 +0.2 682,297 - yhjV BNILDI_03490 0.83 -0.1 682,297 - yhjV BNILDI_03490 0.83 -0.5 682,297 - yhjV BNILDI_03490 0.83 -1.5 682,361 + yhjV BNILDI_03490 0.89 -0.0 682,362 - yhjV BNILDI_03490 0.89 +0.3 682,363 + yhjV BNILDI_03490 0.89 -0.1 682,364 - yhjV BNILDI_03490 0.89 +0.0 682,402 + -0.8 682,403 - +0.7 682,403 - +0.5 682,403 - -0.6 682,405 - +0.3 682,438 - +1.8 682,448 + +0.5 682,537 + +0.8 682,578 + +1.5 682,578 + -0.2 682,578 + -0.2 682,594 + -0.6 682,603 - -1.3 682,834 + dppF BNILDI_03495 0.30 +0.1 682,835 - dppF BNILDI_03495 0.30 +0.6 682,835 - dppF BNILDI_03495 0.30 +0.5 682,890 - dppF BNILDI_03495 0.35 +0.2 682,897 + dppF BNILDI_03495 0.36 +0.2 682,898 - dppF BNILDI_03495 0.36 -0.7 682,898 - dppF BNILDI_03495 0.36 -0.7 682,898 - dppF BNILDI_03495 0.36 -0.3 682,898 - dppF BNILDI_03495 0.36 +0.1 682,898 - dppF BNILDI_03495 0.36 -0.8 683,060 + dppF BNILDI_03495 0.52 -0.2 683,077 + dppF BNILDI_03495 0.54 +0.4 683,077 + dppF BNILDI_03495 0.54 -0.3 683,078 - dppF BNILDI_03495 0.54 -0.3 683,156 + dppF BNILDI_03495 0.62 +0.8 683,159 + dppF BNILDI_03495 0.62 +0.1 683,159 + dppF BNILDI_03495 0.62 -1.1 683,160 - dppF BNILDI_03495 0.62 +1.0 683,302 + dppF BNILDI_03495 0.76 -0.5 683,302 + dppF BNILDI_03495 0.76 -0.3 683,302 + dppF BNILDI_03495 0.76 -0.2 683,303 - dppF BNILDI_03495 0.76 +0.3 683,303 - dppF BNILDI_03495 0.76 -0.5 683,535 - +0.4 683,540 + -0.8 683,540 + -1.9 683,541 - +0.5 683,541 - -0.4 683,605 + +0.2 683,605 + +0.3 683,606 - +1.1 683,688 + dppD BNILDI_03500 0.15 +0.1 683,774 - dppD BNILDI_03500 0.24 -0.4 683,774 - dppD BNILDI_03500 0.24 +0.7 683,775 + dppD BNILDI_03500 0.24 -0.1 683,838 + dppD BNILDI_03500 0.31 -0.1 683,838 + dppD BNILDI_03500 0.31 -0.2 683,839 - dppD BNILDI_03500 0.31 -1.1 683,839 - dppD BNILDI_03500 0.31 -0.1 683,839 - dppD BNILDI_03500 0.31 +0.3 683,839 - dppD BNILDI_03500 0.31 +0.1 683,839 - dppD BNILDI_03500 0.31 +0.6 683,854 + dppD BNILDI_03500 0.32 -0.7 683,855 - dppD BNILDI_03500 0.32 -0.0 683,890 + dppD BNILDI_03500 0.36 +0.1 683,890 + dppD BNILDI_03500 0.36 -0.6 683,894 + dppD BNILDI_03500 0.36 +0.5 683,936 + dppD BNILDI_03500 0.41 -0.6 684,289 + dppD BNILDI_03500 0.76 -0.4 684,290 - dppD BNILDI_03500 0.77 -0.1 684,290 - dppD BNILDI_03500 0.77 -0.3 684,438 + -0.8 684,500 - -1.5 684,509 + -0.7 684,509 + -0.0 684,533 - +0.5 684,533 - +0.1
Or see this region's nucleotide sequence