Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bcsG and BNILDI_03455 are separated by 86 nucleotides BNILDI_03455 and BNILDI_03465 are separated by 62 nucleotides BNILDI_03465 and BNILDI_03470 are separated by 4 nucleotides BNILDI_03470 and BNILDI_03480 are separated by 375 nucleotides
BNILDI_03450: bcsG - cellulose biosynthesis protein BcsG, at 678,685 to 679,599
bcsG
BNILDI_03455: BNILDI_03455 - Type I toxin-antitoxin system toxin Ldr family protein, at 679,686 to 679,793
_03455
BNILDI_03465: BNILDI_03465 - hypothetical protein, at 679,856 to 680,164
_03465
BNILDI_03470: BNILDI_03470 - Type I toxin-antitoxin system toxin Ldr family protein, at 680,169 to 680,276
_03470
BNILDI_03480: BNILDI_03480 - Type I toxin-antitoxin system toxin Ldr family protein, at 680,652 to 680,759
_03480
Position (kb) 679
680
681 Strain fitness (log2 ratio) -1
0
1 at 679.087 kb on + strand, within bcsG at 679.088 kb on - strand, within bcsG at 679.088 kb on - strand, within bcsG at 679.088 kb on - strand, within bcsG at 679.147 kb on + strand, within bcsG at 679.218 kb on + strand, within bcsG at 679.219 kb on - strand, within bcsG at 679.280 kb on + strand, within bcsG at 679.289 kb on + strand, within bcsG at 679.289 kb on + strand, within bcsG at 679.289 kb on + strand, within bcsG at 679.312 kb on - strand, within bcsG at 679.529 kb on + strand at 679.529 kb on + strand at 679.530 kb on - strand at 679.530 kb on - strand at 679.530 kb on - strand at 679.556 kb on - strand at 679.598 kb on - strand at 679.718 kb on + strand, within BNILDI_03455 at 679.718 kb on + strand, within BNILDI_03455 at 679.793 kb on + strand at 679.838 kb on + strand at 679.839 kb on - strand at 679.936 kb on + strand, within BNILDI_03465 at 679.991 kb on - strand, within BNILDI_03465 at 680.293 kb on + strand at 680.474 kb on - strand at 680.762 kb on - strand at 680.776 kb on + strand at 680.811 kb on + strand at 680.833 kb on + strand at 680.833 kb on + strand at 680.850 kb on - strand at 681.018 kb on - strand at 681.026 kb on + strand at 681.146 kb on + strand at 681.147 kb on - strand at 681.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 679,087 + bcsG BNILDI_03450 0.44 -0.8 679,088 - bcsG BNILDI_03450 0.44 +0.1 679,088 - bcsG BNILDI_03450 0.44 +0.4 679,088 - bcsG BNILDI_03450 0.44 +0.8 679,147 + bcsG BNILDI_03450 0.50 -0.9 679,218 + bcsG BNILDI_03450 0.58 +0.1 679,219 - bcsG BNILDI_03450 0.58 -0.2 679,280 + bcsG BNILDI_03450 0.65 +0.5 679,289 + bcsG BNILDI_03450 0.66 +0.2 679,289 + bcsG BNILDI_03450 0.66 -1.5 679,289 + bcsG BNILDI_03450 0.66 -0.0 679,312 - bcsG BNILDI_03450 0.69 +1.0 679,529 + -0.2 679,529 + +0.2 679,530 - +0.2 679,530 - -0.0 679,530 - -0.1 679,556 - -0.1 679,598 - -0.2 679,718 + BNILDI_03455 0.30 -0.7 679,718 + BNILDI_03455 0.30 +0.2 679,793 + +0.1 679,838 + +0.4 679,839 - -0.1 679,936 + BNILDI_03465 0.26 -0.9 679,991 - BNILDI_03465 0.44 +0.1 680,293 + -0.8 680,474 - -0.1 680,762 - -1.3 680,776 + -0.3 680,811 + +0.3 680,833 + -0.1 680,833 + +0.7 680,850 - +1.1 681,018 - +0.5 681,026 + +0.7 681,146 + +0.1 681,147 - -0.3 681,154 - -0.1
Or see this region's nucleotide sequence