Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dctR and yhiD are separated by 41 nucleotides yhiD and hdeB are separated by 135 nucleotides hdeB and hdeA are separated by 103 nucleotides hdeA and hdeD are separated by 254 nucleotides
BNILDI_03270: dctR - HTH-type transcriptional regulator DctR, at 634,336 to 634,866
dctR
BNILDI_03275: yhiD - MgtC/SapB family protein, at 634,908 to 635,483
yhiD
BNILDI_03280: hdeB - acid-activated periplasmic chaperone HdeB, at 635,619 to 635,957
hdeB
BNILDI_03285: hdeA - acid-activated periplasmic chaperone HdeA, at 636,061 to 636,393
hdeA
BNILDI_03290: hdeD - acid-resistance protein HdeD, at 636,648 to 637,220
hdeD
Position (kb) 635
636 Strain fitness (log2 ratio) -1
0
1 at 634.777 kb on + strand, within dctR at 634.794 kb on + strand, within dctR at 634.855 kb on + strand at 634.877 kb on + strand at 634.909 kb on + strand at 634.913 kb on + strand at 634.968 kb on + strand, within yhiD at 635.103 kb on + strand, within yhiD at 635.148 kb on + strand, within yhiD at 635.195 kb on - strand, within yhiD at 635.195 kb on - strand, within yhiD at 635.209 kb on + strand, within yhiD at 635.225 kb on + strand, within yhiD at 635.236 kb on - strand, within yhiD at 635.236 kb on - strand, within yhiD at 635.282 kb on + strand, within yhiD at 635.445 kb on + strand at 635.555 kb on + strand at 635.556 kb on - strand at 635.753 kb on + strand, within hdeB at 635.754 kb on - strand, within hdeB at 635.756 kb on - strand, within hdeB at 635.757 kb on + strand, within hdeB at 635.820 kb on - strand, within hdeB at 635.972 kb on - strand at 636.132 kb on + strand, within hdeA at 636.147 kb on + strand, within hdeA at 636.182 kb on - strand, within hdeA at 636.182 kb on - strand, within hdeA at 636.396 kb on + strand at 636.397 kb on - strand at 636.454 kb on - strand at 636.628 kb on + strand at 636.648 kb on - strand at 636.652 kb on + strand at 636.652 kb on + strand at 636.658 kb on + strand at 636.659 kb on - strand at 636.912 kb on + strand, within hdeD at 636.928 kb on - strand, within hdeD
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 634,777 + dctR BNILDI_03270 0.83 -0.3 634,794 + dctR BNILDI_03270 0.86 +0.3 634,855 + +0.5 634,877 + +0.2 634,909 + -0.1 634,913 + -0.2 634,968 + yhiD BNILDI_03275 0.10 -0.7 635,103 + yhiD BNILDI_03275 0.34 -0.7 635,148 + yhiD BNILDI_03275 0.42 +0.8 635,195 - yhiD BNILDI_03275 0.50 +0.9 635,195 - yhiD BNILDI_03275 0.50 -0.8 635,209 + yhiD BNILDI_03275 0.52 -0.2 635,225 + yhiD BNILDI_03275 0.55 +0.3 635,236 - yhiD BNILDI_03275 0.57 -0.1 635,236 - yhiD BNILDI_03275 0.57 -0.6 635,282 + yhiD BNILDI_03275 0.65 -0.9 635,445 + -0.9 635,555 + -0.2 635,556 - -1.0 635,753 + hdeB BNILDI_03280 0.40 +0.3 635,754 - hdeB BNILDI_03280 0.40 +0.3 635,756 - hdeB BNILDI_03280 0.40 +0.2 635,757 + hdeB BNILDI_03280 0.41 +0.5 635,820 - hdeB BNILDI_03280 0.59 +0.1 635,972 - +0.3 636,132 + hdeA BNILDI_03285 0.21 -1.1 636,147 + hdeA BNILDI_03285 0.26 +0.2 636,182 - hdeA BNILDI_03285 0.36 +0.3 636,182 - hdeA BNILDI_03285 0.36 -0.2 636,396 + -1.1 636,397 - -0.0 636,454 - +0.7 636,628 + -0.1 636,648 - +0.8 636,652 + -0.2 636,652 + +0.1 636,658 + -0.3 636,659 - +0.5 636,912 + hdeD BNILDI_03290 0.46 +0.1 636,928 - hdeD BNILDI_03290 0.49 +0.3
Or see this region's nucleotide sequence