Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arsB and arsC are separated by 12 nucleotides arsC and BNILDI_03250 are separated by 133 nucleotides BNILDI_03250 and BNILDI_03255 are separated by 106 nucleotides
BNILDI_03240: arsB - arsenite/antimonite:H(+) antiporter ArsB, at 628,299 to 629,588
arsB
BNILDI_03245: arsC - glutaredoxin-dependent arsenate reductase, at 629,601 to 630,026
arsC
BNILDI_03250: BNILDI_03250 - transcriptional regulator, at 630,160 to 630,456
_03250
BNILDI_03255: BNILDI_03255 - putative permease, at 630,563 to 631,564
_03255
Position (kb) 630
631 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 629.166 kb on + strand, within arsB at 629.166 kb on + strand, within arsB at 629.166 kb on + strand, within arsB at 629.166 kb on + strand, within arsB at 629.167 kb on - strand, within arsB at 629.167 kb on - strand, within arsB at 629.167 kb on - strand, within arsB at 629.297 kb on + strand, within arsB at 629.297 kb on + strand, within arsB at 629.297 kb on + strand, within arsB at 629.298 kb on - strand, within arsB at 629.298 kb on - strand, within arsB at 629.309 kb on + strand, within arsB at 629.385 kb on + strand, within arsB at 629.449 kb on + strand, within arsB at 629.465 kb on - strand at 629.480 kb on + strand at 629.486 kb on + strand at 629.502 kb on + strand at 629.503 kb on - strand at 629.503 kb on - strand at 629.503 kb on - strand at 629.519 kb on + strand at 629.594 kb on + strand at 629.594 kb on + strand at 629.595 kb on - strand at 629.601 kb on - strand at 629.612 kb on + strand at 629.613 kb on - strand at 629.619 kb on + strand at 629.620 kb on - strand at 629.649 kb on - strand, within arsC at 629.651 kb on + strand, within arsC at 629.652 kb on - strand, within arsC at 629.652 kb on - strand, within arsC at 629.781 kb on - strand, within arsC at 630.048 kb on + strand at 630.099 kb on - strand at 630.130 kb on + strand at 630.130 kb on + strand at 630.131 kb on - strand at 630.143 kb on - strand at 630.175 kb on - strand at 630.179 kb on - strand at 630.298 kb on + strand, within BNILDI_03250 at 630.298 kb on + strand, within BNILDI_03250 at 630.300 kb on + strand, within BNILDI_03250 at 630.300 kb on + strand, within BNILDI_03250 at 630.300 kb on + strand, within BNILDI_03250 at 630.301 kb on - strand, within BNILDI_03250 at 630.301 kb on - strand, within BNILDI_03250 at 630.301 kb on - strand, within BNILDI_03250 at 630.394 kb on + strand, within BNILDI_03250 at 630.395 kb on - strand, within BNILDI_03250 at 630.418 kb on + strand, within BNILDI_03250 at 630.419 kb on - strand, within BNILDI_03250 at 630.456 kb on + strand at 630.456 kb on + strand at 630.457 kb on - strand at 630.558 kb on + strand at 630.558 kb on + strand at 630.562 kb on + strand at 630.562 kb on + strand at 630.562 kb on + strand at 630.563 kb on - strand at 630.563 kb on - strand at 630.563 kb on - strand at 630.563 kb on - strand at 630.568 kb on + strand at 630.569 kb on - strand at 630.641 kb on - strand at 630.670 kb on - strand, within BNILDI_03255 at 630.773 kb on - strand, within BNILDI_03255 at 630.795 kb on + strand, within BNILDI_03255 at 630.865 kb on + strand, within BNILDI_03255 at 630.923 kb on + strand, within BNILDI_03255 at 630.962 kb on - strand, within BNILDI_03255 at 630.964 kb on + strand, within BNILDI_03255 at 631.061 kb on + strand, within BNILDI_03255 at 631.062 kb on - strand, within BNILDI_03255 at 631.062 kb on - strand, within BNILDI_03255 at 631.063 kb on + strand, within BNILDI_03255 at 631.063 kb on + strand, within BNILDI_03255 at 631.064 kb on - strand, within BNILDI_03255 at 631.064 kb on - strand, within BNILDI_03255 at 631.064 kb on - strand, within BNILDI_03255 at 631.064 kb on - strand, within BNILDI_03255 at 631.064 kb on - strand, within BNILDI_03255 at 631.064 kb on - strand, within BNILDI_03255 at 631.064 kb on - strand, within BNILDI_03255 at 631.100 kb on - strand, within BNILDI_03255 at 631.119 kb on + strand, within BNILDI_03255 at 631.153 kb on + strand, within BNILDI_03255 at 631.154 kb on - strand, within BNILDI_03255 at 631.154 kb on - strand, within BNILDI_03255 at 631.154 kb on - strand, within BNILDI_03255 at 631.154 kb on - strand, within BNILDI_03255 at 631.171 kb on - strand, within BNILDI_03255 at 631.207 kb on - strand, within BNILDI_03255 at 631.207 kb on - strand, within BNILDI_03255 at 631.231 kb on - strand, within BNILDI_03255 at 631.233 kb on + strand, within BNILDI_03255 at 631.233 kb on + strand, within BNILDI_03255 at 631.247 kb on - strand, within BNILDI_03255 at 631.297 kb on + strand, within BNILDI_03255 at 631.344 kb on - strand, within BNILDI_03255
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 629,166 + arsB BNILDI_03240 0.67 -0.5 629,166 + arsB BNILDI_03240 0.67 -0.7 629,166 + arsB BNILDI_03240 0.67 +0.4 629,166 + arsB BNILDI_03240 0.67 +0.3 629,167 - arsB BNILDI_03240 0.67 -0.2 629,167 - arsB BNILDI_03240 0.67 +0.4 629,167 - arsB BNILDI_03240 0.67 -0.4 629,297 + arsB BNILDI_03240 0.77 -0.0 629,297 + arsB BNILDI_03240 0.77 +0.3 629,297 + arsB BNILDI_03240 0.77 +0.1 629,298 - arsB BNILDI_03240 0.77 -2.1 629,298 - arsB BNILDI_03240 0.77 +0.0 629,309 + arsB BNILDI_03240 0.78 +0.1 629,385 + arsB BNILDI_03240 0.84 -0.1 629,449 + arsB BNILDI_03240 0.89 -0.1 629,465 - -0.3 629,480 + +0.2 629,486 + +0.0 629,502 + -0.5 629,503 - +1.5 629,503 - +0.2 629,503 - -0.5 629,519 + -2.1 629,594 + -0.4 629,594 + +0.4 629,595 - -0.4 629,601 - +0.2 629,612 + +0.2 629,613 - -2.1 629,619 + +0.5 629,620 - +4.9 629,649 - arsC BNILDI_03245 0.11 -1.2 629,651 + arsC BNILDI_03245 0.12 +0.5 629,652 - arsC BNILDI_03245 0.12 -1.3 629,652 - arsC BNILDI_03245 0.12 -0.2 629,781 - arsC BNILDI_03245 0.42 -0.1 630,048 + +0.4 630,099 - -2.1 630,130 + -0.5 630,130 + -2.2 630,131 - -1.3 630,143 - +0.2 630,175 - +0.2 630,179 - -0.2 630,298 + BNILDI_03250 0.46 +0.3 630,298 + BNILDI_03250 0.46 +0.2 630,300 + BNILDI_03250 0.47 +0.4 630,300 + BNILDI_03250 0.47 +0.3 630,300 + BNILDI_03250 0.47 +0.7 630,301 - BNILDI_03250 0.47 -0.8 630,301 - BNILDI_03250 0.47 +1.5 630,301 - BNILDI_03250 0.47 +0.1 630,394 + BNILDI_03250 0.79 -1.0 630,395 - BNILDI_03250 0.79 +0.7 630,418 + BNILDI_03250 0.87 +0.0 630,419 - BNILDI_03250 0.87 +0.7 630,456 + -0.2 630,456 + -0.3 630,457 - +0.2 630,558 + +0.4 630,558 + -0.2 630,562 + +2.1 630,562 + +0.5 630,562 + +0.2 630,563 - -0.3 630,563 - -0.9 630,563 - -1.6 630,563 - +0.2 630,568 + +0.4 630,569 - -0.4 630,641 - +0.4 630,670 - BNILDI_03255 0.11 -0.7 630,773 - BNILDI_03255 0.21 +0.9 630,795 + BNILDI_03255 0.23 +0.3 630,865 + BNILDI_03255 0.30 +0.8 630,923 + BNILDI_03255 0.36 -0.1 630,962 - BNILDI_03255 0.40 -0.1 630,964 + BNILDI_03255 0.40 +0.9 631,061 + BNILDI_03255 0.50 +0.2 631,062 - BNILDI_03255 0.50 -0.1 631,062 - BNILDI_03255 0.50 +0.5 631,063 + BNILDI_03255 0.50 +0.7 631,063 + BNILDI_03255 0.50 +0.1 631,064 - BNILDI_03255 0.50 +0.9 631,064 - BNILDI_03255 0.50 -0.6 631,064 - BNILDI_03255 0.50 +0.3 631,064 - BNILDI_03255 0.50 -0.4 631,064 - BNILDI_03255 0.50 +0.3 631,064 - BNILDI_03255 0.50 -2.1 631,064 - BNILDI_03255 0.50 +0.2 631,100 - BNILDI_03255 0.54 +0.4 631,119 + BNILDI_03255 0.55 -0.1 631,153 + BNILDI_03255 0.59 +0.4 631,154 - BNILDI_03255 0.59 -1.8 631,154 - BNILDI_03255 0.59 -0.5 631,154 - BNILDI_03255 0.59 -0.6 631,154 - BNILDI_03255 0.59 -0.2 631,171 - BNILDI_03255 0.61 -0.6 631,207 - BNILDI_03255 0.64 +0.2 631,207 - BNILDI_03255 0.64 +0.1 631,231 - BNILDI_03255 0.67 -0.7 631,233 + BNILDI_03255 0.67 +0.1 631,233 + BNILDI_03255 0.67 +0.2 631,247 - BNILDI_03255 0.68 -0.0 631,297 + BNILDI_03255 0.73 +0.5 631,344 - BNILDI_03255 0.78 +0.4
Or see this region's nucleotide sequence