Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nikB and nikC overlap by 4 nucleotides nikC and nikD overlap by 1 nucleotides nikD and nikE overlap by 4 nucleotides nikE and nikE are separated by 5 nucleotides
BNILDI_03075: nikB - nickel ABC transporter permease subunit NikB, at 595,117 to 596,061
nikB
BNILDI_03080: nikC - nickel ABC transporter permease subunit NikC, at 596,058 to 596,891
nikC
BNILDI_03085: nikD - nickel import ATP-binding protein NikD, at 596,891 to 597,655
nikD
BNILDI_03090: nikE - nickel import ATP-binding protein NikE, at 597,652 to 598,458
nikE
BNILDI_03095: nikE - nickel import ATP-binding protein NikE, at 598,464 to 598,865
nikE
Position (kb) 596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 595.926 kb on + strand, within nikB at 595.990 kb on - strand at 596.135 kb on + strand at 596.233 kb on + strand, within nikC at 596.233 kb on + strand, within nikC at 596.233 kb on + strand, within nikC at 596.233 kb on + strand, within nikC at 596.234 kb on - strand, within nikC at 596.234 kb on - strand, within nikC at 596.244 kb on - strand, within nikC at 596.400 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.468 kb on - strand, within nikC at 596.536 kb on + strand, within nikC at 596.663 kb on + strand, within nikC at 596.663 kb on + strand, within nikC at 596.757 kb on + strand, within nikC at 596.758 kb on - strand, within nikC at 596.758 kb on - strand, within nikC at 596.758 kb on - strand, within nikC at 596.758 kb on - strand, within nikC at 596.759 kb on + strand, within nikC at 596.889 kb on + strand at 596.911 kb on - strand at 596.914 kb on + strand at 596.914 kb on + strand at 596.915 kb on - strand at 596.915 kb on - strand at 596.915 kb on - strand at 596.955 kb on + strand at 597.167 kb on - strand, within nikD at 597.238 kb on + strand, within nikD at 597.255 kb on + strand, within nikD at 597.256 kb on - strand, within nikD at 597.373 kb on + strand, within nikD at 597.564 kb on + strand, within nikD at 597.592 kb on + strand at 597.592 kb on + strand at 597.659 kb on + strand at 597.659 kb on + strand at 597.659 kb on + strand at 597.659 kb on + strand at 597.660 kb on - strand at 597.663 kb on + strand at 597.664 kb on - strand at 597.834 kb on - strand, within nikE at 597.855 kb on + strand, within nikE at 597.858 kb on + strand, within nikE at 597.859 kb on - strand, within nikE at 597.859 kb on - strand, within nikE at 597.859 kb on - strand, within nikE at 597.933 kb on - strand, within nikE at 598.208 kb on + strand, within nikE at 598.241 kb on + strand, within nikE at 598.241 kb on + strand, within nikE at 598.366 kb on - strand, within nikE at 598.371 kb on - strand, within nikE at 598.401 kb on - strand at 598.416 kb on - strand at 598.416 kb on - strand at 598.539 kb on - strand, within nikE at 598.641 kb on + strand, within nikE at 598.641 kb on + strand, within nikE at 598.642 kb on - strand, within nikE at 598.642 kb on - strand, within nikE at 598.642 kb on - strand, within nikE
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 595,926 + nikB BNILDI_03075 0.86 +0.1 595,990 - -0.1 596,135 + +0.1 596,233 + nikC BNILDI_03080 0.21 -0.8 596,233 + nikC BNILDI_03080 0.21 +1.3 596,233 + nikC BNILDI_03080 0.21 +0.1 596,233 + nikC BNILDI_03080 0.21 -0.3 596,234 - nikC BNILDI_03080 0.21 -0.7 596,234 - nikC BNILDI_03080 0.21 +1.3 596,244 - nikC BNILDI_03080 0.22 +0.1 596,400 - nikC BNILDI_03080 0.41 -0.6 596,468 - nikC BNILDI_03080 0.49 +0.2 596,468 - nikC BNILDI_03080 0.49 +0.2 596,468 - nikC BNILDI_03080 0.49 +1.4 596,468 - nikC BNILDI_03080 0.49 +1.0 596,468 - nikC BNILDI_03080 0.49 +1.1 596,536 + nikC BNILDI_03080 0.57 +0.7 596,663 + nikC BNILDI_03080 0.73 +0.0 596,663 + nikC BNILDI_03080 0.73 +0.2 596,757 + nikC BNILDI_03080 0.84 -0.0 596,758 - nikC BNILDI_03080 0.84 +0.4 596,758 - nikC BNILDI_03080 0.84 -0.1 596,758 - nikC BNILDI_03080 0.84 -0.0 596,758 - nikC BNILDI_03080 0.84 -0.0 596,759 + nikC BNILDI_03080 0.84 +0.7 596,889 + +0.7 596,911 - +1.0 596,914 + +0.0 596,914 + +0.5 596,915 - +2.2 596,915 - +2.1 596,915 - +0.5 596,955 + +0.3 597,167 - nikD BNILDI_03085 0.36 -0.4 597,238 + nikD BNILDI_03085 0.45 -0.1 597,255 + nikD BNILDI_03085 0.48 -0.5 597,256 - nikD BNILDI_03085 0.48 +0.4 597,373 + nikD BNILDI_03085 0.63 -0.5 597,564 + nikD BNILDI_03085 0.88 +0.2 597,592 + +0.2 597,592 + -0.1 597,659 + +0.0 597,659 + -0.1 597,659 + -1.3 597,659 + -1.6 597,660 - -0.3 597,663 + -0.0 597,664 - +1.0 597,834 - nikE BNILDI_03090 0.23 -0.4 597,855 + nikE BNILDI_03090 0.25 -0.1 597,858 + nikE BNILDI_03090 0.26 +0.8 597,859 - nikE BNILDI_03090 0.26 +0.0 597,859 - nikE BNILDI_03090 0.26 +0.1 597,859 - nikE BNILDI_03090 0.26 -0.5 597,933 - nikE BNILDI_03090 0.35 +0.3 598,208 + nikE BNILDI_03090 0.69 -1.6 598,241 + nikE BNILDI_03090 0.73 -0.3 598,241 + nikE BNILDI_03090 0.73 +0.3 598,366 - nikE BNILDI_03090 0.88 -3.0 598,371 - nikE BNILDI_03090 0.89 +0.5 598,401 - +0.5 598,416 - +0.2 598,416 - -2.2 598,539 - nikE BNILDI_03095 0.19 +0.8 598,641 + nikE BNILDI_03095 0.44 +0.2 598,641 + nikE BNILDI_03095 0.44 -0.2 598,642 - nikE BNILDI_03095 0.44 -1.7 598,642 - nikE BNILDI_03095 0.44 -0.2 598,642 - nikE BNILDI_03095 0.44 +0.7
Or see this region's nucleotide sequence