Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhhM and yhhN are separated by 140 nucleotides yhhN and zntA are separated by 73 nucleotides zntA and BNILDI_03040 are separated by 101 nucleotides BNILDI_03040 and yhhQ are separated by 220 nucleotides
BNILDI_03025: yhhM - Uncharacterized protein YhhM, at 585,127 to 585,486
yhhM
BNILDI_03030: yhhN - Uncharacterized membrane protein YhhN, at 585,627 to 586,253
yhhN
BNILDI_03035: zntA - Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA, at 586,327 to 588,525
zntA
BNILDI_03040: BNILDI_03040 - Sulfur carrier protein TusA, at 588,627 to 588,872
_03040
BNILDI_03045: yhhQ - 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguani ne transporter, at 589,093 to 589,758
yhhQ
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.384 kb on + strand, within yhhM at 585.418 kb on - strand, within yhhM at 585.516 kb on - strand at 585.521 kb on + strand at 585.533 kb on + strand at 585.533 kb on + strand at 585.534 kb on - strand at 585.564 kb on + strand at 585.623 kb on + strand at 585.624 kb on - strand at 585.717 kb on - strand, within yhhN at 585.780 kb on - strand, within yhhN at 585.780 kb on - strand, within yhhN at 585.783 kb on + strand, within yhhN at 585.784 kb on - strand, within yhhN at 585.784 kb on - strand, within yhhN at 585.858 kb on + strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.894 kb on + strand, within yhhN at 585.895 kb on - strand, within yhhN at 585.895 kb on - strand, within yhhN at 585.895 kb on - strand, within yhhN at 585.903 kb on + strand, within yhhN at 586.009 kb on - strand, within yhhN at 586.134 kb on - strand, within yhhN at 586.209 kb on + strand at 586.210 kb on - strand at 586.210 kb on - strand at 586.254 kb on + strand at 586.313 kb on - strand at 586.476 kb on + strand at 586.476 kb on + strand at 586.476 kb on + strand at 586.477 kb on - strand at 586.523 kb on + strand at 586.568 kb on + strand, within zntA at 586.569 kb on - strand, within zntA at 586.865 kb on - strand, within zntA at 586.915 kb on - strand, within zntA at 587.383 kb on - strand, within zntA at 587.386 kb on + strand, within zntA at 587.387 kb on - strand, within zntA at 587.387 kb on - strand, within zntA at 587.389 kb on - strand, within zntA at 587.470 kb on + strand, within zntA at 587.473 kb on - strand, within zntA at 587.513 kb on + strand, within zntA at 587.514 kb on - strand, within zntA at 587.517 kb on + strand, within zntA at 587.518 kb on - strand, within zntA at 587.518 kb on - strand, within zntA at 587.580 kb on + strand, within zntA at 587.581 kb on - strand, within zntA at 587.963 kb on + strand, within zntA at 587.963 kb on + strand, within zntA at 587.964 kb on - strand, within zntA at 587.964 kb on - strand, within zntA at 587.968 kb on - strand, within zntA at 587.968 kb on - strand, within zntA at 587.968 kb on - strand, within zntA at 588.129 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.388 kb on - strand at 588.488 kb on + strand at 588.902 kb on + strand at 588.956 kb on + strand at 588.976 kb on + strand at 588.976 kb on + strand at 588.976 kb on + strand at 588.977 kb on - strand at 588.985 kb on - strand at 589.022 kb on + strand at 589.022 kb on + strand at 589.022 kb on + strand at 589.023 kb on - strand at 589.023 kb on - strand at 589.088 kb on - strand at 589.093 kb on - strand at 589.093 kb on - strand at 589.276 kb on - strand, within yhhQ at 589.306 kb on - strand, within yhhQ at 589.331 kb on + strand, within yhhQ at 589.342 kb on + strand, within yhhQ at 589.343 kb on - strand, within yhhQ at 589.363 kb on + strand, within yhhQ at 589.363 kb on + strand, within yhhQ at 589.364 kb on - strand, within yhhQ at 589.447 kb on + strand, within yhhQ at 589.447 kb on + strand, within yhhQ
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 585,384 + yhhM BNILDI_03025 0.71 +1.1 585,418 - yhhM BNILDI_03025 0.81 -1.5 585,516 - -0.0 585,521 + +0.1 585,533 + -0.2 585,533 + -0.0 585,534 - +1.0 585,564 + -0.5 585,623 + +1.1 585,624 - +0.7 585,717 - yhhN BNILDI_03030 0.14 -0.1 585,780 - yhhN BNILDI_03030 0.24 -0.4 585,780 - yhhN BNILDI_03030 0.24 -3.4 585,783 + yhhN BNILDI_03030 0.25 +0.1 585,784 - yhhN BNILDI_03030 0.25 -0.0 585,784 - yhhN BNILDI_03030 0.25 -0.2 585,858 + yhhN BNILDI_03030 0.37 -0.3 585,859 - yhhN BNILDI_03030 0.37 -0.5 585,859 - yhhN BNILDI_03030 0.37 -2.1 585,859 - yhhN BNILDI_03030 0.37 -0.7 585,859 - yhhN BNILDI_03030 0.37 -0.9 585,894 + yhhN BNILDI_03030 0.43 -0.2 585,895 - yhhN BNILDI_03030 0.43 +2.1 585,895 - yhhN BNILDI_03030 0.43 -0.4 585,895 - yhhN BNILDI_03030 0.43 +0.5 585,903 + yhhN BNILDI_03030 0.44 +0.5 586,009 - yhhN BNILDI_03030 0.61 +0.3 586,134 - yhhN BNILDI_03030 0.81 -0.3 586,209 + -0.7 586,210 - -0.3 586,210 - -1.0 586,254 + -0.1 586,313 - -0.4 586,476 + +1.0 586,476 + +0.2 586,476 + -0.1 586,477 - +0.1 586,523 + -0.5 586,568 + zntA BNILDI_03035 0.11 +0.6 586,569 - zntA BNILDI_03035 0.11 -0.8 586,865 - zntA BNILDI_03035 0.24 -0.1 586,915 - zntA BNILDI_03035 0.27 +0.1 587,383 - zntA BNILDI_03035 0.48 +0.0 587,386 + zntA BNILDI_03035 0.48 -0.3 587,387 - zntA BNILDI_03035 0.48 +0.2 587,387 - zntA BNILDI_03035 0.48 +1.3 587,389 - zntA BNILDI_03035 0.48 +0.1 587,470 + zntA BNILDI_03035 0.52 +0.3 587,473 - zntA BNILDI_03035 0.52 +0.0 587,513 + zntA BNILDI_03035 0.54 +0.7 587,514 - zntA BNILDI_03035 0.54 -0.5 587,517 + zntA BNILDI_03035 0.54 +0.6 587,518 - zntA BNILDI_03035 0.54 +0.2 587,518 - zntA BNILDI_03035 0.54 +0.1 587,580 + zntA BNILDI_03035 0.57 +0.1 587,581 - zntA BNILDI_03035 0.57 +0.4 587,963 + zntA BNILDI_03035 0.74 -0.0 587,963 + zntA BNILDI_03035 0.74 +0.5 587,964 - zntA BNILDI_03035 0.74 +0.5 587,964 - zntA BNILDI_03035 0.74 -0.0 587,968 - zntA BNILDI_03035 0.75 -0.2 587,968 - zntA BNILDI_03035 0.75 -2.2 587,968 - zntA BNILDI_03035 0.75 -0.2 588,129 + zntA BNILDI_03035 0.82 +0.0 588,140 + zntA BNILDI_03035 0.82 +0.6 588,140 + zntA BNILDI_03035 0.82 -0.0 588,140 + zntA BNILDI_03035 0.82 +0.4 588,388 - +1.2 588,488 + -0.9 588,902 + -1.1 588,956 + +0.4 588,976 + +0.1 588,976 + +0.5 588,976 + +0.9 588,977 - -1.4 588,985 - -0.0 589,022 + +0.1 589,022 + +0.9 589,022 + +0.4 589,023 - -1.7 589,023 - -0.4 589,088 - +0.4 589,093 - +0.6 589,093 - -0.5 589,276 - yhhQ BNILDI_03045 0.27 -0.5 589,306 - yhhQ BNILDI_03045 0.32 -0.1 589,331 + yhhQ BNILDI_03045 0.36 -1.0 589,342 + yhhQ BNILDI_03045 0.37 +0.5 589,343 - yhhQ BNILDI_03045 0.38 +0.2 589,363 + yhhQ BNILDI_03045 0.41 +0.5 589,363 + yhhQ BNILDI_03045 0.41 +0.3 589,364 - yhhQ BNILDI_03045 0.41 +0.2 589,447 + yhhQ BNILDI_03045 0.53 -0.4 589,447 + yhhQ BNILDI_03045 0.53 +0.1
Or see this region's nucleotide sequence