Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsmD and yhhL overlap by 11 nucleotides yhhL and yhhM are separated by 2 nucleotides yhhM and yhhN are separated by 140 nucleotides yhhN and zntA are separated by 73 nucleotides
BNILDI_03015: rsmD - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 584,269 to 584,865
rsmD
BNILDI_03020: yhhL - DUF1145 domain-containing protein, at 584,855 to 585,124
yhhL
BNILDI_03025: yhhM - Uncharacterized protein YhhM, at 585,127 to 585,486
yhhM
BNILDI_03030: yhhN - Uncharacterized membrane protein YhhN, at 585,627 to 586,253
yhhN
BNILDI_03035: zntA - Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA, at 586,327 to 588,525
zntA
Position (kb) 585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 584.167 kb on - strand at 584.167 kb on - strand at 584.167 kb on - strand at 584.171 kb on - strand at 584.175 kb on - strand at 584.175 kb on - strand at 584.175 kb on - strand at 584.175 kb on - strand at 584.175 kb on - strand at 584.175 kb on - strand at 584.203 kb on - strand at 584.209 kb on + strand at 584.209 kb on + strand at 584.237 kb on + strand at 584.238 kb on - strand at 584.238 kb on - strand at 584.244 kb on + strand at 584.245 kb on - strand at 584.265 kb on + strand at 584.401 kb on - strand, within rsmD at 584.401 kb on - strand, within rsmD at 584.401 kb on - strand, within rsmD at 584.541 kb on - strand, within rsmD at 584.545 kb on - strand, within rsmD at 584.561 kb on + strand, within rsmD at 584.561 kb on + strand, within rsmD at 584.562 kb on - strand, within rsmD at 584.562 kb on - strand, within rsmD at 584.634 kb on + strand, within rsmD at 584.673 kb on - strand, within rsmD at 584.673 kb on - strand, within rsmD at 584.731 kb on + strand, within rsmD at 584.732 kb on - strand, within rsmD at 584.732 kb on - strand, within rsmD at 584.787 kb on - strand, within rsmD at 584.787 kb on - strand, within rsmD at 584.827 kb on + strand at 584.827 kb on + strand at 584.828 kb on - strand at 584.863 kb on + strand at 584.864 kb on - strand at 584.864 kb on - strand at 584.905 kb on - strand, within yhhL at 584.990 kb on - strand, within yhhL at 584.990 kb on - strand, within yhhL at 584.990 kb on - strand, within yhhL at 585.128 kb on + strand at 585.128 kb on + strand at 585.129 kb on - strand at 585.129 kb on - strand at 585.167 kb on + strand, within yhhM at 585.206 kb on + strand, within yhhM at 585.272 kb on + strand, within yhhM at 585.273 kb on - strand, within yhhM at 585.279 kb on + strand, within yhhM at 585.384 kb on + strand, within yhhM at 585.418 kb on - strand, within yhhM at 585.516 kb on - strand at 585.521 kb on + strand at 585.533 kb on + strand at 585.533 kb on + strand at 585.534 kb on - strand at 585.564 kb on + strand at 585.623 kb on + strand at 585.624 kb on - strand at 585.717 kb on - strand, within yhhN at 585.780 kb on - strand, within yhhN at 585.780 kb on - strand, within yhhN at 585.783 kb on + strand, within yhhN at 585.784 kb on - strand, within yhhN at 585.784 kb on - strand, within yhhN at 585.858 kb on + strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.859 kb on - strand, within yhhN at 585.894 kb on + strand, within yhhN at 585.895 kb on - strand, within yhhN at 585.895 kb on - strand, within yhhN at 585.895 kb on - strand, within yhhN at 585.903 kb on + strand, within yhhN at 586.009 kb on - strand, within yhhN at 586.134 kb on - strand, within yhhN at 586.209 kb on + strand at 586.210 kb on - strand at 586.210 kb on - strand at 586.254 kb on + strand at 586.313 kb on - strand at 586.476 kb on + strand at 586.476 kb on + strand at 586.476 kb on + strand at 586.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 584,167 - -0.4 584,167 - -0.2 584,167 - -0.7 584,171 - +0.2 584,175 - +0.0 584,175 - -0.4 584,175 - -0.3 584,175 - -0.2 584,175 - +1.0 584,175 - -1.0 584,203 - -0.7 584,209 + +1.2 584,209 + -0.5 584,237 + +0.4 584,238 - +2.0 584,238 - +0.1 584,244 + +0.7 584,245 - -0.2 584,265 + -1.3 584,401 - rsmD BNILDI_03015 0.22 -3.2 584,401 - rsmD BNILDI_03015 0.22 -0.2 584,401 - rsmD BNILDI_03015 0.22 -1.1 584,541 - rsmD BNILDI_03015 0.46 -0.5 584,545 - rsmD BNILDI_03015 0.46 -0.6 584,561 + rsmD BNILDI_03015 0.49 -0.5 584,561 + rsmD BNILDI_03015 0.49 -0.7 584,562 - rsmD BNILDI_03015 0.49 +1.0 584,562 - rsmD BNILDI_03015 0.49 -0.8 584,634 + rsmD BNILDI_03015 0.61 -1.4 584,673 - rsmD BNILDI_03015 0.68 -0.1 584,673 - rsmD BNILDI_03015 0.68 -1.7 584,731 + rsmD BNILDI_03015 0.77 -1.7 584,732 - rsmD BNILDI_03015 0.78 +0.1 584,732 - rsmD BNILDI_03015 0.78 -0.9 584,787 - rsmD BNILDI_03015 0.87 -1.5 584,787 - rsmD BNILDI_03015 0.87 -1.1 584,827 + +0.3 584,827 + -0.7 584,828 - +0.2 584,863 + +0.7 584,864 - -1.0 584,864 - +0.0 584,905 - yhhL BNILDI_03020 0.19 +0.1 584,990 - yhhL BNILDI_03020 0.50 -0.2 584,990 - yhhL BNILDI_03020 0.50 -0.7 584,990 - yhhL BNILDI_03020 0.50 +0.1 585,128 + +0.4 585,128 + -0.0 585,129 - +0.4 585,129 - +0.7 585,167 + yhhM BNILDI_03025 0.11 -1.7 585,206 + yhhM BNILDI_03025 0.22 -0.0 585,272 + yhhM BNILDI_03025 0.40 +0.4 585,273 - yhhM BNILDI_03025 0.41 -0.7 585,279 + yhhM BNILDI_03025 0.42 +0.3 585,384 + yhhM BNILDI_03025 0.71 +1.1 585,418 - yhhM BNILDI_03025 0.81 -1.5 585,516 - -0.0 585,521 + +0.1 585,533 + -0.2 585,533 + -0.0 585,534 - +1.0 585,564 + -0.5 585,623 + +1.1 585,624 - +0.7 585,717 - yhhN BNILDI_03030 0.14 -0.1 585,780 - yhhN BNILDI_03030 0.24 -0.4 585,780 - yhhN BNILDI_03030 0.24 -3.4 585,783 + yhhN BNILDI_03030 0.25 +0.1 585,784 - yhhN BNILDI_03030 0.25 -0.0 585,784 - yhhN BNILDI_03030 0.25 -0.2 585,858 + yhhN BNILDI_03030 0.37 -0.3 585,859 - yhhN BNILDI_03030 0.37 -0.5 585,859 - yhhN BNILDI_03030 0.37 -2.1 585,859 - yhhN BNILDI_03030 0.37 -0.7 585,859 - yhhN BNILDI_03030 0.37 -0.9 585,894 + yhhN BNILDI_03030 0.43 -0.2 585,895 - yhhN BNILDI_03030 0.43 +2.1 585,895 - yhhN BNILDI_03030 0.43 -0.4 585,895 - yhhN BNILDI_03030 0.43 +0.5 585,903 + yhhN BNILDI_03030 0.44 +0.5 586,009 - yhhN BNILDI_03030 0.61 +0.3 586,134 - yhhN BNILDI_03030 0.81 -0.3 586,209 + -0.7 586,210 - -0.3 586,210 - -1.0 586,254 + -0.1 586,313 - -0.4 586,476 + +1.0 586,476 + +0.2 586,476 + -0.1 586,477 - +0.1
Or see this region's nucleotide sequence