Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt malP and malT are separated by 611 nucleotides malT and rtcA are separated by 42 nucleotides
BNILDI_02755: malP - maltodextrin phosphorylase, at 526,805 to 529,198
malP
BNILDI_02760: malT - HTH-type transcriptional regulator MalT, at 529,810 to 532,515
malT
BNILDI_02765: rtcA - RNA 3'-terminal phosphate cyclase, at 532,558 to 533,574
rtcA
Position (kb) 529
530
531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 528.915 kb on + strand, within malP at 528.915 kb on + strand, within malP at 528.916 kb on - strand, within malP at 528.916 kb on - strand, within malP at 528.935 kb on + strand, within malP at 528.936 kb on - strand, within malP at 528.936 kb on - strand, within malP at 529.008 kb on + strand at 529.008 kb on + strand at 529.012 kb on + strand at 529.013 kb on - strand at 529.013 kb on - strand at 529.013 kb on - strand at 529.013 kb on - strand at 529.198 kb on + strand at 529.198 kb on + strand at 529.241 kb on + strand at 529.241 kb on + strand at 529.241 kb on + strand at 529.287 kb on - strand at 529.337 kb on + strand at 529.337 kb on + strand at 529.337 kb on + strand at 529.381 kb on - strand at 529.402 kb on + strand at 529.402 kb on + strand at 529.403 kb on - strand at 529.403 kb on - strand at 529.426 kb on + strand at 529.446 kb on + strand at 529.446 kb on + strand at 529.446 kb on + strand at 529.447 kb on - strand at 529.447 kb on - strand at 529.485 kb on - strand at 529.485 kb on - strand at 529.488 kb on + strand at 529.521 kb on + strand at 529.521 kb on + strand at 529.527 kb on + strand at 529.530 kb on + strand at 529.531 kb on - strand at 529.544 kb on + strand at 529.585 kb on + strand at 529.604 kb on + strand at 529.720 kb on + strand at 529.742 kb on + strand at 529.743 kb on - strand at 529.743 kb on - strand at 529.743 kb on - strand at 529.806 kb on - strand at 529.806 kb on - strand at 529.810 kb on - strand at 529.829 kb on + strand at 530.114 kb on - strand, within malT at 530.114 kb on - strand, within malT at 530.179 kb on + strand, within malT at 530.197 kb on + strand, within malT at 530.212 kb on - strand, within malT at 530.245 kb on - strand, within malT at 530.245 kb on - strand, within malT at 530.367 kb on + strand, within malT at 530.367 kb on + strand, within malT at 530.475 kb on - strand, within malT at 530.480 kb on + strand, within malT at 530.520 kb on + strand, within malT at 530.569 kb on + strand, within malT at 530.767 kb on + strand, within malT at 531.001 kb on - strand, within malT at 531.041 kb on + strand, within malT at 531.042 kb on - strand, within malT at 531.093 kb on + strand, within malT at 531.094 kb on - strand, within malT at 531.262 kb on + strand, within malT at 531.262 kb on + strand, within malT at 531.263 kb on - strand, within malT at 531.385 kb on + strand, within malT at 531.683 kb on + strand, within malT at 531.684 kb on - strand, within malT at 531.739 kb on + strand, within malT at 531.784 kb on + strand, within malT at 531.785 kb on - strand, within malT at 532.012 kb on - strand, within malT at 532.098 kb on + strand, within malT at 532.099 kb on - strand, within malT at 532.165 kb on - strand, within malT at 532.554 kb on + strand at 532.554 kb on + strand at 532.555 kb on - strand at 532.595 kb on - strand at 532.674 kb on + strand, within rtcA at 532.727 kb on + strand, within rtcA at 532.727 kb on + strand, within rtcA at 532.872 kb on + strand, within rtcA at 532.908 kb on + strand, within rtcA at 532.908 kb on + strand, within rtcA at 532.909 kb on - strand, within rtcA at 532.945 kb on - strand, within rtcA at 532.984 kb on + strand, within rtcA at 532.984 kb on + strand, within rtcA at 532.985 kb on - strand, within rtcA at 532.987 kb on + strand, within rtcA at 532.988 kb on - strand, within rtcA at 532.988 kb on - strand, within rtcA at 533.096 kb on + strand, within rtcA at 533.110 kb on + strand, within rtcA at 533.110 kb on + strand, within rtcA at 533.110 kb on + strand, within rtcA at 533.475 kb on + strand at 533.476 kb on - strand at 533.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 528,915 + malP BNILDI_02755 0.88 -0.5 528,915 + malP BNILDI_02755 0.88 +0.8 528,916 - malP BNILDI_02755 0.88 +0.4 528,916 - malP BNILDI_02755 0.88 -0.1 528,935 + malP BNILDI_02755 0.89 -0.5 528,936 - malP BNILDI_02755 0.89 +0.7 528,936 - malP BNILDI_02755 0.89 -0.7 529,008 + -0.8 529,008 + -0.0 529,012 + -0.3 529,013 - -0.3 529,013 - +1.1 529,013 - +0.7 529,013 - -0.0 529,198 + -1.4 529,198 + +0.1 529,241 + -1.4 529,241 + +0.3 529,241 + -0.2 529,287 - -0.5 529,337 + +0.7 529,337 + +0.3 529,337 + -0.6 529,381 - -0.9 529,402 + +0.2 529,402 + +0.2 529,403 - -0.4 529,403 - +0.6 529,426 + +0.4 529,446 + -0.0 529,446 + +0.3 529,446 + +0.2 529,447 - -0.0 529,447 - +0.1 529,485 - -0.2 529,485 - -0.7 529,488 + +0.6 529,521 + -0.2 529,521 + +0.2 529,527 + -0.0 529,530 + +0.3 529,531 - -0.1 529,544 + -0.1 529,585 + +1.3 529,604 + +0.4 529,720 + -0.2 529,742 + -0.4 529,743 - +0.0 529,743 - -0.3 529,743 - -0.3 529,806 - -1.7 529,806 - +2.3 529,810 - +0.3 529,829 + -0.9 530,114 - malT BNILDI_02760 0.11 +0.4 530,114 - malT BNILDI_02760 0.11 -1.4 530,179 + malT BNILDI_02760 0.14 -0.2 530,197 + malT BNILDI_02760 0.14 -0.0 530,212 - malT BNILDI_02760 0.15 -0.6 530,245 - malT BNILDI_02760 0.16 -1.7 530,245 - malT BNILDI_02760 0.16 +1.0 530,367 + malT BNILDI_02760 0.21 -0.3 530,367 + malT BNILDI_02760 0.21 -0.0 530,475 - malT BNILDI_02760 0.25 +0.2 530,480 + malT BNILDI_02760 0.25 +0.5 530,520 + malT BNILDI_02760 0.26 -0.8 530,569 + malT BNILDI_02760 0.28 +2.1 530,767 + malT BNILDI_02760 0.35 +0.4 531,001 - malT BNILDI_02760 0.44 +0.4 531,041 + malT BNILDI_02760 0.45 +0.3 531,042 - malT BNILDI_02760 0.46 -0.6 531,093 + malT BNILDI_02760 0.47 -1.0 531,094 - malT BNILDI_02760 0.47 -0.9 531,262 + malT BNILDI_02760 0.54 +0.6 531,262 + malT BNILDI_02760 0.54 +0.6 531,263 - malT BNILDI_02760 0.54 -0.4 531,385 + malT BNILDI_02760 0.58 +0.0 531,683 + malT BNILDI_02760 0.69 +0.1 531,684 - malT BNILDI_02760 0.69 -1.5 531,739 + malT BNILDI_02760 0.71 -2.5 531,784 + malT BNILDI_02760 0.73 +0.4 531,785 - malT BNILDI_02760 0.73 +0.3 532,012 - malT BNILDI_02760 0.81 -0.0 532,098 + malT BNILDI_02760 0.85 -2.7 532,099 - malT BNILDI_02760 0.85 -2.5 532,165 - malT BNILDI_02760 0.87 -1.0 532,554 + -1.4 532,554 + -0.1 532,555 - -0.1 532,595 - +0.7 532,674 + rtcA BNILDI_02765 0.11 +0.0 532,727 + rtcA BNILDI_02765 0.17 +0.1 532,727 + rtcA BNILDI_02765 0.17 +0.2 532,872 + rtcA BNILDI_02765 0.31 -0.2 532,908 + rtcA BNILDI_02765 0.34 +0.3 532,908 + rtcA BNILDI_02765 0.34 -0.5 532,909 - rtcA BNILDI_02765 0.35 +0.8 532,945 - rtcA BNILDI_02765 0.38 -0.3 532,984 + rtcA BNILDI_02765 0.42 +0.7 532,984 + rtcA BNILDI_02765 0.42 +0.9 532,985 - rtcA BNILDI_02765 0.42 +1.1 532,987 + rtcA BNILDI_02765 0.42 -0.1 532,988 - rtcA BNILDI_02765 0.42 +1.3 532,988 - rtcA BNILDI_02765 0.42 -0.7 533,096 + rtcA BNILDI_02765 0.53 +0.2 533,110 + rtcA BNILDI_02765 0.54 +0.0 533,110 + rtcA BNILDI_02765 0.54 +0.4 533,110 + rtcA BNILDI_02765 0.54 +1.4 533,475 + +0.0 533,476 - +0.1 533,476 - +0.0
Or see this region's nucleotide sequence