Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yrdA and yrdB overlap by 25 nucleotides yrdB and aroE overlap by 4 nucleotides aroE and tsaC are separated by 4 nucleotides tsaC and yrdD are separated by 4 nucleotides
BNILDI_02155: yrdA - Protein YrdA, at 426,313 to 426,867
yrdA
BNILDI_02160: yrdB - Uncharacterized protein YrdB, at 426,843 to 427,100
yrdB
BNILDI_02165: aroE - shikimate dehydrogenase, at 427,097 to 427,915
aroE
BNILDI_02170: tsaC - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 427,920 to 428,492
tsaC
BNILDI_02175: yrdD - Uncharacterized protein YrdD, at 428,497 to 429,039
yrdD
Position (kb) 427
428 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 426.137 kb on + strand at 426.138 kb on - strand at 426.245 kb on + strand at 426.268 kb on - strand at 426.298 kb on - strand at 426.308 kb on + strand at 426.312 kb on + strand at 426.312 kb on + strand at 426.369 kb on - strand, within yrdA at 426.458 kb on + strand, within yrdA at 426.459 kb on - strand, within yrdA at 426.463 kb on + strand, within yrdA at 426.463 kb on + strand, within yrdA at 426.463 kb on + strand, within yrdA at 426.463 kb on + strand, within yrdA at 426.464 kb on - strand, within yrdA at 426.464 kb on - strand, within yrdA at 426.467 kb on + strand, within yrdA at 426.468 kb on - strand, within yrdA at 426.505 kb on - strand, within yrdA at 426.505 kb on - strand, within yrdA at 426.505 kb on - strand, within yrdA at 426.522 kb on + strand, within yrdA at 426.662 kb on + strand, within yrdA at 426.665 kb on + strand, within yrdA at 426.665 kb on + strand, within yrdA at 426.665 kb on + strand, within yrdA at 426.665 kb on + strand, within yrdA at 426.666 kb on - strand, within yrdA at 426.711 kb on + strand, within yrdA at 426.736 kb on + strand, within yrdA at 426.771 kb on - strand, within yrdA at 426.814 kb on + strand at 426.814 kb on + strand at 426.815 kb on - strand at 426.815 kb on - strand at 426.815 kb on - strand at 426.835 kb on + strand at 426.892 kb on - strand, within yrdB at 426.959 kb on + strand, within yrdB at 427.042 kb on - strand, within yrdB at 427.042 kb on - strand, within yrdB at 427.052 kb on + strand, within yrdB at 427.053 kb on - strand, within yrdB at 427.127 kb on + strand at 427.128 kb on - strand at 427.129 kb on + strand at 427.130 kb on - strand at 427.139 kb on + strand at 427.140 kb on - strand at 427.290 kb on + strand, within aroE at 427.290 kb on + strand, within aroE at 427.291 kb on - strand, within aroE at 427.291 kb on - strand, within aroE at 427.360 kb on + strand, within aroE at 427.360 kb on + strand, within aroE at 427.472 kb on - strand, within aroE at 427.511 kb on + strand, within aroE at 427.514 kb on + strand, within aroE at 427.553 kb on - strand, within aroE at 427.553 kb on - strand, within aroE at 427.605 kb on - strand, within aroE at 427.661 kb on - strand, within aroE at 427.661 kb on - strand, within aroE at 427.819 kb on - strand, within aroE at 427.905 kb on + strand at 427.905 kb on + strand at 428.530 kb on - strand at 428.727 kb on + strand, within yrdD at 428.728 kb on - strand, within yrdD at 428.728 kb on - strand, within yrdD at 428.785 kb on - strand, within yrdD at 428.821 kb on + strand, within yrdD at 428.878 kb on - strand, within yrdD at 428.913 kb on - strand, within yrdD
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 426,137 + -1.5 426,138 - -1.1 426,245 + +0.2 426,268 - -0.2 426,298 - +0.1 426,308 + -1.6 426,312 + +0.2 426,312 + -0.6 426,369 - yrdA BNILDI_02155 0.10 +0.2 426,458 + yrdA BNILDI_02155 0.26 +0.1 426,459 - yrdA BNILDI_02155 0.26 -0.1 426,463 + yrdA BNILDI_02155 0.27 -0.1 426,463 + yrdA BNILDI_02155 0.27 -0.0 426,463 + yrdA BNILDI_02155 0.27 -0.5 426,463 + yrdA BNILDI_02155 0.27 +1.9 426,464 - yrdA BNILDI_02155 0.27 +0.9 426,464 - yrdA BNILDI_02155 0.27 -0.5 426,467 + yrdA BNILDI_02155 0.28 +0.3 426,468 - yrdA BNILDI_02155 0.28 +1.3 426,505 - yrdA BNILDI_02155 0.35 +0.1 426,505 - yrdA BNILDI_02155 0.35 +0.1 426,505 - yrdA BNILDI_02155 0.35 +0.2 426,522 + yrdA BNILDI_02155 0.38 -0.0 426,662 + yrdA BNILDI_02155 0.63 -0.4 426,665 + yrdA BNILDI_02155 0.63 +0.2 426,665 + yrdA BNILDI_02155 0.63 -2.9 426,665 + yrdA BNILDI_02155 0.63 +1.6 426,665 + yrdA BNILDI_02155 0.63 +0.0 426,666 - yrdA BNILDI_02155 0.64 +0.9 426,711 + yrdA BNILDI_02155 0.72 +0.6 426,736 + yrdA BNILDI_02155 0.76 +0.3 426,771 - yrdA BNILDI_02155 0.83 +1.0 426,814 + +0.2 426,814 + -0.1 426,815 - -0.5 426,815 - +0.6 426,815 - +0.4 426,835 + +1.6 426,892 - yrdB BNILDI_02160 0.19 +0.1 426,959 + yrdB BNILDI_02160 0.45 +1.1 427,042 - yrdB BNILDI_02160 0.77 +0.2 427,042 - yrdB BNILDI_02160 0.77 -0.1 427,052 + yrdB BNILDI_02160 0.81 +0.7 427,053 - yrdB BNILDI_02160 0.81 -0.9 427,127 + -2.7 427,128 - +0.2 427,129 + -2.5 427,130 - -1.1 427,139 + -4.1 427,140 - +1.1 427,290 + aroE BNILDI_02165 0.24 -2.2 427,290 + aroE BNILDI_02165 0.24 -3.6 427,291 - aroE BNILDI_02165 0.24 -1.4 427,291 - aroE BNILDI_02165 0.24 -2.2 427,360 + aroE BNILDI_02165 0.32 -2.8 427,360 + aroE BNILDI_02165 0.32 -2.8 427,472 - aroE BNILDI_02165 0.46 -2.4 427,511 + aroE BNILDI_02165 0.51 -4.2 427,514 + aroE BNILDI_02165 0.51 -4.0 427,553 - aroE BNILDI_02165 0.56 -3.9 427,553 - aroE BNILDI_02165 0.56 -3.7 427,605 - aroE BNILDI_02165 0.62 -3.0 427,661 - aroE BNILDI_02165 0.69 +1.3 427,661 - aroE BNILDI_02165 0.69 -2.8 427,819 - aroE BNILDI_02165 0.88 -3.0 427,905 + -2.6 427,905 + -3.7 428,530 - -0.1 428,727 + yrdD BNILDI_02175 0.42 -2.1 428,728 - yrdD BNILDI_02175 0.43 +0.5 428,728 - yrdD BNILDI_02175 0.43 -0.9 428,785 - yrdD BNILDI_02175 0.53 -0.2 428,821 + yrdD BNILDI_02175 0.60 -1.2 428,878 - yrdD BNILDI_02175 0.70 -0.7 428,913 - yrdD BNILDI_02175 0.77 -1.4
Or see this region's nucleotide sequence