Strain Fitness in Escherichia coli ECRC62 around BNILDI_02035

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaccC and yhdT are separated by 108 nucleotidesyhdT and panF overlap by 11 nucleotides BNILDI_02030: accC - acetyl-CoA carboxylase biotin carboxylase subunit, at 402,984 to 404,333 accC BNILDI_02035: yhdT - Uncharacterized membrane protein YhdT, at 404,442 to 404,684 yhdT BNILDI_02040: panF - sodium/pantothenate symporter, at 404,674 to 406,125 panF Position (kb) 404 405Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 404.376 kb on - strandat 404.405 kb on + strandat 404.405 kb on + strandat 404.405 kb on + strandat 404.406 kb on - strandat 404.642 kb on + strand, within yhdTat 404.642 kb on + strand, within yhdTat 404.643 kb on - strand, within yhdTat 404.643 kb on - strand, within yhdTat 404.687 kb on + strandat 404.688 kb on - strandat 404.840 kb on - strand, within panFat 404.881 kb on + strand, within panFat 404.883 kb on + strand, within panFat 405.009 kb on + strand, within panFat 405.010 kb on - strand, within panFat 405.185 kb on + strand, within panFat 405.186 kb on - strand, within panFat 405.187 kb on + strand, within panFat 405.188 kb on - strand, within panFat 405.188 kb on - strand, within panFat 405.274 kb on - strand, within panFat 405.284 kb on + strand, within panFat 405.284 kb on + strand, within panFat 405.315 kb on - strand, within panFat 405.387 kb on + strand, within panFat 405.439 kb on - strand, within panFat 405.454 kb on - strand, within panFat 405.454 kb on - strand, within panFat 405.551 kb on + strand, within panFat 405.657 kb on + strand, within panFat 405.657 kb on + strand, within panFat 405.657 kb on + strand, within panFat 405.658 kb on - strand, within panFat 405.658 kb on - strand, within panF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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404,376 - -0.2
404,405 + -0.3
404,405 + -0.3
404,405 + -0.2
404,406 - -3.0
404,642 + yhdT BNILDI_02035 0.82 -2.8
404,642 + yhdT BNILDI_02035 0.82 -1.3
404,643 - yhdT BNILDI_02035 0.83 -0.5
404,643 - yhdT BNILDI_02035 0.83 -0.5
404,687 + -1.1
404,688 - -0.3
404,840 - panF BNILDI_02040 0.11 +0.3
404,881 + panF BNILDI_02040 0.14 -0.8
404,883 + panF BNILDI_02040 0.14 -0.4
405,009 + panF BNILDI_02040 0.23 -1.9
405,010 - panF BNILDI_02040 0.23 -2.7
405,185 + panF BNILDI_02040 0.35 +0.0
405,186 - panF BNILDI_02040 0.35 -0.7
405,187 + panF BNILDI_02040 0.35 -0.0
405,188 - panF BNILDI_02040 0.35 -0.4
405,188 - panF BNILDI_02040 0.35 +0.0
405,274 - panF BNILDI_02040 0.41 -0.3
405,284 + panF BNILDI_02040 0.42 +0.5
405,284 + panF BNILDI_02040 0.42 +1.9
405,315 - panF BNILDI_02040 0.44 +0.9
405,387 + panF BNILDI_02040 0.49 -0.1
405,439 - panF BNILDI_02040 0.53 -0.4
405,454 - panF BNILDI_02040 0.54 +0.4
405,454 - panF BNILDI_02040 0.54 -0.7
405,551 + panF BNILDI_02040 0.60 -0.8
405,657 + panF BNILDI_02040 0.68 -1.7
405,657 + panF BNILDI_02040 0.68 -0.3
405,657 + panF BNILDI_02040 0.68 -0.4
405,658 - panF BNILDI_02040 0.68 +0.0
405,658 - panF BNILDI_02040 0.68 +0.5

Or see this region's nucleotide sequence