Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhcC and gltB are separated by 581 nucleotides gltB and gltD are separated by 12 nucleotides
BNILDI_01845: yhcC - TIGR01212 family radical SAM protein, at 357,495 to 358,424
yhcC
BNILDI_01850: gltB - glutamate synthase large subunit, at 359,006 to 363,559
gltB
BNILDI_01855: gltD - glutamate synthase subunit GltD, at 363,572 to 364,990
gltD
Position (kb) 359
360
361
362
363
364 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 358.026 kb on - strand, within yhcC at 358.097 kb on + strand, within yhcC at 358.123 kb on + strand, within yhcC at 358.124 kb on - strand, within yhcC at 358.127 kb on + strand, within yhcC at 358.163 kb on + strand, within yhcC at 358.186 kb on + strand, within yhcC at 358.280 kb on + strand, within yhcC at 358.311 kb on - strand, within yhcC at 358.355 kb on + strand at 358.356 kb on - strand at 358.401 kb on - strand at 358.718 kb on + strand at 359.005 kb on + strand at 359.006 kb on - strand at 359.099 kb on - strand at 359.099 kb on - strand at 359.105 kb on + strand at 359.157 kb on + strand at 359.157 kb on + strand at 359.158 kb on - strand at 359.158 kb on - strand at 359.170 kb on + strand at 359.170 kb on + strand at 359.170 kb on + strand at 359.170 kb on + strand at 359.181 kb on + strand at 359.181 kb on + strand at 359.196 kb on + strand at 359.197 kb on - strand at 359.197 kb on - strand at 359.355 kb on + strand at 359.356 kb on - strand at 359.356 kb on - strand at 359.621 kb on + strand, within gltB at 359.621 kb on + strand, within gltB at 359.622 kb on - strand, within gltB at 359.622 kb on - strand, within gltB at 359.654 kb on + strand, within gltB at 359.655 kb on - strand, within gltB at 359.656 kb on + strand, within gltB at 359.668 kb on + strand, within gltB at 359.669 kb on - strand, within gltB at 359.669 kb on - strand, within gltB at 359.861 kb on - strand, within gltB at 359.864 kb on + strand, within gltB at 359.864 kb on + strand, within gltB at 359.866 kb on + strand, within gltB at 359.867 kb on - strand, within gltB at 360.073 kb on + strand, within gltB at 360.074 kb on - strand, within gltB at 360.179 kb on + strand, within gltB at 360.237 kb on - strand, within gltB at 360.314 kb on - strand, within gltB at 360.362 kb on + strand, within gltB at 360.363 kb on - strand, within gltB at 360.363 kb on - strand, within gltB at 360.364 kb on + strand, within gltB at 360.365 kb on - strand, within gltB at 360.365 kb on - strand, within gltB at 360.485 kb on + strand, within gltB at 360.485 kb on + strand, within gltB at 360.485 kb on + strand, within gltB at 360.485 kb on + strand, within gltB at 360.486 kb on - strand, within gltB at 360.606 kb on - strand, within gltB at 360.606 kb on - strand, within gltB at 360.612 kb on - strand, within gltB at 360.612 kb on - strand, within gltB at 360.676 kb on + strand, within gltB at 360.676 kb on + strand, within gltB at 360.676 kb on + strand, within gltB at 360.677 kb on - strand, within gltB at 360.747 kb on + strand, within gltB at 360.826 kb on + strand, within gltB at 360.854 kb on - strand, within gltB at 360.910 kb on - strand, within gltB at 361.114 kb on + strand, within gltB at 361.118 kb on + strand, within gltB at 361.124 kb on + strand, within gltB at 361.155 kb on + strand, within gltB at 361.229 kb on + strand, within gltB at 361.317 kb on + strand, within gltB at 361.317 kb on + strand, within gltB at 361.424 kb on - strand, within gltB at 361.424 kb on - strand, within gltB at 361.454 kb on + strand, within gltB at 361.482 kb on - strand, within gltB at 361.607 kb on - strand, within gltB at 361.664 kb on - strand, within gltB at 361.741 kb on + strand, within gltB at 361.859 kb on + strand, within gltB at 361.859 kb on + strand, within gltB at 361.952 kb on + strand, within gltB at 361.952 kb on + strand, within gltB at 361.952 kb on + strand, within gltB at 361.952 kb on + strand, within gltB at 361.952 kb on + strand, within gltB at 361.952 kb on + strand, within gltB at 361.952 kb on + strand, within gltB at 361.953 kb on - strand, within gltB at 361.953 kb on - strand, within gltB at 361.953 kb on - strand, within gltB at 361.953 kb on - strand, within gltB at 362.021 kb on + strand, within gltB at 362.021 kb on + strand, within gltB at 362.022 kb on - strand, within gltB at 362.026 kb on + strand, within gltB at 362.147 kb on + strand, within gltB at 362.148 kb on - strand, within gltB at 362.157 kb on + strand, within gltB at 362.217 kb on - strand, within gltB at 362.217 kb on - strand, within gltB at 362.288 kb on - strand, within gltB at 362.288 kb on - strand, within gltB at 362.288 kb on - strand, within gltB at 362.404 kb on + strand, within gltB at 362.408 kb on + strand, within gltB at 362.409 kb on - strand, within gltB at 362.409 kb on - strand, within gltB at 362.409 kb on - strand, within gltB at 362.409 kb on - strand, within gltB at 362.409 kb on - strand, within gltB at 362.412 kb on + strand, within gltB at 362.412 kb on + strand, within gltB at 362.416 kb on + strand, within gltB at 362.417 kb on - strand, within gltB at 362.417 kb on - strand, within gltB at 362.473 kb on + strand, within gltB at 362.473 kb on + strand, within gltB at 362.474 kb on - strand, within gltB at 362.696 kb on + strand, within gltB at 362.850 kb on - strand, within gltB at 362.894 kb on - strand, within gltB at 362.903 kb on + strand, within gltB at 362.904 kb on - strand, within gltB at 362.963 kb on + strand, within gltB at 362.963 kb on + strand, within gltB at 362.987 kb on + strand, within gltB at 363.163 kb on + strand at 363.164 kb on - strand at 363.203 kb on + strand at 363.203 kb on + strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.204 kb on - strand at 363.205 kb on + strand at 363.205 kb on + strand at 363.206 kb on - strand at 363.342 kb on + strand at 363.343 kb on - strand at 363.409 kb on + strand at 363.410 kb on - strand at 363.410 kb on - strand at 363.499 kb on - strand at 363.521 kb on - strand at 363.761 kb on + strand, within gltD at 363.762 kb on - strand, within gltD at 363.762 kb on - strand, within gltD at 363.944 kb on + strand, within gltD at 363.944 kb on + strand, within gltD at 363.945 kb on - strand, within gltD at 363.945 kb on - strand, within gltD at 363.946 kb on + strand, within gltD at 363.946 kb on + strand, within gltD at 363.946 kb on + strand, within gltD at 363.946 kb on + strand, within gltD at 364.080 kb on + strand, within gltD at 364.165 kb on - strand, within gltD at 364.165 kb on - strand, within gltD at 364.265 kb on + strand, within gltD at 364.266 kb on - strand, within gltD at 364.266 kb on - strand, within gltD at 364.266 kb on - strand, within gltD at 364.343 kb on + strand, within gltD at 364.344 kb on - strand, within gltD at 364.344 kb on - strand, within gltD at 364.484 kb on - strand, within gltD at 364.513 kb on + strand, within gltD
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 358,026 - yhcC BNILDI_01845 0.57 +0.3 358,097 + yhcC BNILDI_01845 0.65 +0.7 358,123 + yhcC BNILDI_01845 0.68 +0.6 358,124 - yhcC BNILDI_01845 0.68 -0.4 358,127 + yhcC BNILDI_01845 0.68 -0.2 358,163 + yhcC BNILDI_01845 0.72 -0.3 358,186 + yhcC BNILDI_01845 0.74 +0.1 358,280 + yhcC BNILDI_01845 0.84 +1.1 358,311 - yhcC BNILDI_01845 0.88 -0.8 358,355 + -0.1 358,356 - -0.5 358,401 - -0.3 358,718 + -0.6 359,005 + +0.4 359,006 - -3.1 359,099 - -3.1 359,099 - -1.3 359,105 + -2.1 359,157 + -1.9 359,157 + -1.4 359,158 - -1.7 359,158 - -1.2 359,170 + -0.0 359,170 + -1.0 359,170 + -0.4 359,170 + -0.1 359,181 + -1.6 359,181 + -4.1 359,196 + -1.1 359,197 - -1.3 359,197 - +1.1 359,355 + -1.7 359,356 - -2.5 359,356 - -1.1 359,621 + gltB BNILDI_01850 0.14 -0.8 359,621 + gltB BNILDI_01850 0.14 -1.4 359,622 - gltB BNILDI_01850 0.14 -1.2 359,622 - gltB BNILDI_01850 0.14 -0.7 359,654 + gltB BNILDI_01850 0.14 -0.8 359,655 - gltB BNILDI_01850 0.14 -1.4 359,656 + gltB BNILDI_01850 0.14 -1.5 359,668 + gltB BNILDI_01850 0.15 -1.0 359,669 - gltB BNILDI_01850 0.15 -2.1 359,669 - gltB BNILDI_01850 0.15 -1.4 359,861 - gltB BNILDI_01850 0.19 -1.1 359,864 + gltB BNILDI_01850 0.19 -0.0 359,864 + gltB BNILDI_01850 0.19 -1.8 359,866 + gltB BNILDI_01850 0.19 -0.9 359,867 - gltB BNILDI_01850 0.19 -1.2 360,073 + gltB BNILDI_01850 0.23 -0.5 360,074 - gltB BNILDI_01850 0.23 -2.6 360,179 + gltB BNILDI_01850 0.26 -1.5 360,237 - gltB BNILDI_01850 0.27 -1.2 360,314 - gltB BNILDI_01850 0.29 -0.7 360,362 + gltB BNILDI_01850 0.30 -1.2 360,363 - gltB BNILDI_01850 0.30 -0.5 360,363 - gltB BNILDI_01850 0.30 -1.5 360,364 + gltB BNILDI_01850 0.30 -1.5 360,365 - gltB BNILDI_01850 0.30 -1.2 360,365 - gltB BNILDI_01850 0.30 +0.1 360,485 + gltB BNILDI_01850 0.32 +0.4 360,485 + gltB BNILDI_01850 0.32 -2.6 360,485 + gltB BNILDI_01850 0.32 -0.6 360,485 + gltB BNILDI_01850 0.32 +0.9 360,486 - gltB BNILDI_01850 0.32 +0.4 360,606 - gltB BNILDI_01850 0.35 -1.7 360,606 - gltB BNILDI_01850 0.35 -1.6 360,612 - gltB BNILDI_01850 0.35 -2.3 360,612 - gltB BNILDI_01850 0.35 +0.1 360,676 + gltB BNILDI_01850 0.37 -0.9 360,676 + gltB BNILDI_01850 0.37 +0.4 360,676 + gltB BNILDI_01850 0.37 -3.8 360,677 - gltB BNILDI_01850 0.37 -0.8 360,747 + gltB BNILDI_01850 0.38 -0.6 360,826 + gltB BNILDI_01850 0.40 +1.1 360,854 - gltB BNILDI_01850 0.41 -1.7 360,910 - gltB BNILDI_01850 0.42 -2.4 361,114 + gltB BNILDI_01850 0.46 -0.4 361,118 + gltB BNILDI_01850 0.46 -2.7 361,124 + gltB BNILDI_01850 0.47 +0.1 361,155 + gltB BNILDI_01850 0.47 -0.6 361,229 + gltB BNILDI_01850 0.49 -2.8 361,317 + gltB BNILDI_01850 0.51 -1.9 361,317 + gltB BNILDI_01850 0.51 -1.8 361,424 - gltB BNILDI_01850 0.53 -1.5 361,424 - gltB BNILDI_01850 0.53 -0.2 361,454 + gltB BNILDI_01850 0.54 -1.3 361,482 - gltB BNILDI_01850 0.54 -0.8 361,607 - gltB BNILDI_01850 0.57 -1.4 361,664 - gltB BNILDI_01850 0.58 -0.2 361,741 + gltB BNILDI_01850 0.60 +0.2 361,859 + gltB BNILDI_01850 0.63 -1.6 361,859 + gltB BNILDI_01850 0.63 -3.1 361,952 + gltB BNILDI_01850 0.65 -1.7 361,952 + gltB BNILDI_01850 0.65 -3.9 361,952 + gltB BNILDI_01850 0.65 +0.7 361,952 + gltB BNILDI_01850 0.65 -2.7 361,952 + gltB BNILDI_01850 0.65 -0.8 361,952 + gltB BNILDI_01850 0.65 -1.3 361,952 + gltB BNILDI_01850 0.65 -0.7 361,953 - gltB BNILDI_01850 0.65 -1.0 361,953 - gltB BNILDI_01850 0.65 -2.6 361,953 - gltB BNILDI_01850 0.65 -1.7 361,953 - gltB BNILDI_01850 0.65 -4.1 362,021 + gltB BNILDI_01850 0.66 -1.4 362,021 + gltB BNILDI_01850 0.66 -2.0 362,022 - gltB BNILDI_01850 0.66 -1.5 362,026 + gltB BNILDI_01850 0.66 -2.0 362,147 + gltB BNILDI_01850 0.69 +0.5 362,148 - gltB BNILDI_01850 0.69 -0.5 362,157 + gltB BNILDI_01850 0.69 -1.5 362,217 - gltB BNILDI_01850 0.71 -3.4 362,217 - gltB BNILDI_01850 0.71 -1.8 362,288 - gltB BNILDI_01850 0.72 -1.6 362,288 - gltB BNILDI_01850 0.72 -2.0 362,288 - gltB BNILDI_01850 0.72 -1.2 362,404 + gltB BNILDI_01850 0.75 -1.0 362,408 + gltB BNILDI_01850 0.75 -1.1 362,409 - gltB BNILDI_01850 0.75 -1.8 362,409 - gltB BNILDI_01850 0.75 -0.9 362,409 - gltB BNILDI_01850 0.75 -3.0 362,409 - gltB BNILDI_01850 0.75 -2.0 362,409 - gltB BNILDI_01850 0.75 -2.8 362,412 + gltB BNILDI_01850 0.75 -2.5 362,412 + gltB BNILDI_01850 0.75 -2.2 362,416 + gltB BNILDI_01850 0.75 -2.9 362,417 - gltB BNILDI_01850 0.75 -1.1 362,417 - gltB BNILDI_01850 0.75 -1.8 362,473 + gltB BNILDI_01850 0.76 -0.2 362,473 + gltB BNILDI_01850 0.76 -0.6 362,474 - gltB BNILDI_01850 0.76 -2.5 362,696 + gltB BNILDI_01850 0.81 -1.4 362,850 - gltB BNILDI_01850 0.84 -0.9 362,894 - gltB BNILDI_01850 0.85 -3.6 362,903 + gltB BNILDI_01850 0.86 -0.7 362,904 - gltB BNILDI_01850 0.86 -1.5 362,963 + gltB BNILDI_01850 0.87 -2.0 362,963 + gltB BNILDI_01850 0.87 -2.2 362,987 + gltB BNILDI_01850 0.87 -0.7 363,163 + +1.1 363,164 - -1.7 363,203 + -0.5 363,203 + -1.3 363,204 - -1.0 363,204 - -1.3 363,204 - -2.5 363,204 - -1.3 363,204 - -3.3 363,205 + -1.1 363,205 + -1.2 363,206 - -1.1 363,342 + +0.3 363,343 - +0.5 363,409 + +1.3 363,410 - -0.7 363,410 - -2.1 363,499 - -1.5 363,521 - +0.1 363,761 + gltD BNILDI_01855 0.13 -0.7 363,762 - gltD BNILDI_01855 0.13 -0.9 363,762 - gltD BNILDI_01855 0.13 -3.5 363,944 + gltD BNILDI_01855 0.26 -0.5 363,944 + gltD BNILDI_01855 0.26 -1.4 363,945 - gltD BNILDI_01855 0.26 +0.4 363,945 - gltD BNILDI_01855 0.26 -0.5 363,946 + gltD BNILDI_01855 0.26 -0.9 363,946 + gltD BNILDI_01855 0.26 -2.3 363,946 + gltD BNILDI_01855 0.26 -0.6 363,946 + gltD BNILDI_01855 0.26 -1.9 364,080 + gltD BNILDI_01855 0.36 +0.3 364,165 - gltD BNILDI_01855 0.42 -1.2 364,165 - gltD BNILDI_01855 0.42 -0.4 364,265 + gltD BNILDI_01855 0.49 +0.8 364,266 - gltD BNILDI_01855 0.49 -1.0 364,266 - gltD BNILDI_01855 0.49 -1.7 364,266 - gltD BNILDI_01855 0.49 -1.4 364,343 + gltD BNILDI_01855 0.54 -1.1 364,344 - gltD BNILDI_01855 0.54 -0.8 364,344 - gltD BNILDI_01855 0.54 +0.7 364,484 - gltD BNILDI_01855 0.64 -0.8 364,513 + gltD BNILDI_01855 0.66 +0.0
Or see this region's nucleotide sequence