Strain Fitness in Escherichia coli ECRC62 around BNILDI_01410

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprlF and yhaV overlap by 1 nucleotidesyhaV and agaR are separated by 54 nucleotidesagaR and kbaZ are separated by 248 nucleotides BNILDI_01400: prlF - type II toxin-antitoxin system antitoxin PrlF, at 278,022 to 278,357 prlF BNILDI_01405: yhaV - type II toxin-antitoxin system ribonuclease toxin YhaV, at 278,357 to 278,821 yhaV BNILDI_01410: agaR - aga operon transcriptional regulator AgaR, at 278,876 to 279,685 agaR BNILDI_01415: kbaZ - tagatose-bisphosphate aldolase subunit KbaZ, at 279,934 to 281,214 kbaZ Position (kb) 278 279 280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 277.909 kb on - strandat 277.950 kb on + strandat 277.981 kb on - strandat 278.006 kb on - strandat 278.031 kb on - strandat 278.213 kb on + strand, within prlFat 278.214 kb on - strand, within prlFat 278.214 kb on - strand, within prlFat 278.216 kb on + strand, within prlFat 278.216 kb on + strand, within prlFat 278.216 kb on + strand, within prlFat 278.217 kb on - strand, within prlFat 278.393 kb on + strandat 278.394 kb on - strandat 278.430 kb on + strand, within yhaVat 278.452 kb on - strand, within yhaVat 278.499 kb on + strand, within yhaVat 278.714 kb on + strand, within yhaVat 278.715 kb on - strand, within yhaVat 278.735 kb on + strand, within yhaVat 278.735 kb on + strand, within yhaVat 278.742 kb on + strand, within yhaVat 278.969 kb on - strand, within agaRat 278.989 kb on + strand, within agaRat 279.013 kb on + strand, within agaRat 279.089 kb on - strand, within agaRat 279.126 kb on - strand, within agaRat 279.142 kb on + strand, within agaRat 279.293 kb on + strand, within agaRat 279.433 kb on + strand, within agaRat 279.553 kb on + strand, within agaRat 279.553 kb on + strand, within agaRat 279.554 kb on - strand, within agaRat 279.554 kb on - strand, within agaRat 279.554 kb on - strand, within agaRat 279.565 kb on - strand, within agaRat 279.685 kb on + strandat 279.686 kb on - strandat 279.743 kb on - strandat 279.745 kb on + strandat 279.783 kb on + strandat 279.807 kb on + strandat 280.108 kb on + strand, within kbaZat 280.279 kb on + strand, within kbaZat 280.279 kb on + strand, within kbaZat 280.280 kb on - strand, within kbaZ

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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277,909 - -0.3
277,950 + -3.2
277,981 - +0.2
278,006 - +0.0
278,031 - -0.1
278,213 + prlF BNILDI_01400 0.57 +0.3
278,214 - prlF BNILDI_01400 0.57 +0.1
278,214 - prlF BNILDI_01400 0.57 +0.7
278,216 + prlF BNILDI_01400 0.58 -0.5
278,216 + prlF BNILDI_01400 0.58 -1.9
278,216 + prlF BNILDI_01400 0.58 -2.3
278,217 - prlF BNILDI_01400 0.58 +0.1
278,393 + +0.0
278,394 - -1.8
278,430 + yhaV BNILDI_01405 0.16 +0.5
278,452 - yhaV BNILDI_01405 0.20 +1.0
278,499 + yhaV BNILDI_01405 0.31 -0.6
278,714 + yhaV BNILDI_01405 0.77 +1.2
278,715 - yhaV BNILDI_01405 0.77 +2.2
278,735 + yhaV BNILDI_01405 0.81 -0.3
278,735 + yhaV BNILDI_01405 0.81 +0.7
278,742 + yhaV BNILDI_01405 0.83 +0.2
278,969 - agaR BNILDI_01410 0.11 +0.6
278,989 + agaR BNILDI_01410 0.14 -1.7
279,013 + agaR BNILDI_01410 0.17 -0.5
279,089 - agaR BNILDI_01410 0.26 +1.7
279,126 - agaR BNILDI_01410 0.31 -1.0
279,142 + agaR BNILDI_01410 0.33 -0.5
279,293 + agaR BNILDI_01410 0.51 +1.3
279,433 + agaR BNILDI_01410 0.69 -0.0
279,553 + agaR BNILDI_01410 0.84 +0.0
279,553 + agaR BNILDI_01410 0.84 +0.2
279,554 - agaR BNILDI_01410 0.84 -0.2
279,554 - agaR BNILDI_01410 0.84 -0.1
279,554 - agaR BNILDI_01410 0.84 -4.0
279,565 - agaR BNILDI_01410 0.85 -0.5
279,685 + -0.6
279,686 - +0.3
279,743 - -0.6
279,745 + +1.1
279,783 + -0.0
279,807 + -0.0
280,108 + kbaZ BNILDI_01415 0.14 -0.5
280,279 + kbaZ BNILDI_01415 0.27 +0.4
280,279 + kbaZ BNILDI_01415 0.27 -0.1
280,280 - kbaZ BNILDI_01415 0.27 -0.2

Or see this region's nucleotide sequence