Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dlsT and tdcG are separated by 274 nucleotides tdcG and tdcF are separated by 71 nucleotides tdcF and tdcE are separated by 13 nucleotides
BNILDI_01315: dlsT - putative serine transporter, at 256,307 to 257,638
dlsT
BNILDI_01320: tdcG - L-serine ammonia-lyase, at 257,913 to 259,277
tdcG
BNILDI_01325: tdcF - enamine/imine deaminase, at 259,349 to 259,738
tdcF
BNILDI_01330: tdcE - 2-ketobutyrate formate-lyase/pyruvate formate-lyase, at 259,752 to 262,046
tdcE
Position (kb) 257
258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.926 kb on - strand, within dlsT at 256.969 kb on + strand, within dlsT at 256.970 kb on - strand, within dlsT at 256.972 kb on + strand, within dlsT at 256.973 kb on - strand, within dlsT at 257.023 kb on - strand, within dlsT at 257.166 kb on + strand, within dlsT at 257.166 kb on + strand, within dlsT at 257.209 kb on + strand, within dlsT at 257.209 kb on + strand, within dlsT at 257.210 kb on - strand, within dlsT at 257.210 kb on - strand, within dlsT at 257.218 kb on - strand, within dlsT at 257.218 kb on - strand, within dlsT at 257.283 kb on + strand, within dlsT at 257.294 kb on + strand, within dlsT at 257.318 kb on + strand, within dlsT at 257.318 kb on + strand, within dlsT at 257.319 kb on - strand, within dlsT at 257.344 kb on - strand, within dlsT at 257.351 kb on - strand, within dlsT at 257.374 kb on + strand, within dlsT at 257.375 kb on - strand, within dlsT at 257.380 kb on + strand, within dlsT at 257.380 kb on + strand, within dlsT at 257.381 kb on - strand, within dlsT at 257.400 kb on + strand, within dlsT at 257.401 kb on - strand, within dlsT at 257.401 kb on - strand, within dlsT at 257.512 kb on + strand at 257.512 kb on + strand at 257.513 kb on - strand at 257.533 kb on + strand at 257.708 kb on - strand at 257.963 kb on - strand at 257.966 kb on + strand at 257.976 kb on - strand at 257.993 kb on - strand at 257.993 kb on - strand at 258.012 kb on - strand at 258.092 kb on + strand, within tdcG at 258.115 kb on - strand, within tdcG at 258.183 kb on + strand, within tdcG at 258.299 kb on + strand, within tdcG at 258.302 kb on - strand, within tdcG at 258.379 kb on + strand, within tdcG at 258.478 kb on + strand, within tdcG at 258.478 kb on + strand, within tdcG at 258.525 kb on - strand, within tdcG at 258.687 kb on + strand, within tdcG at 258.716 kb on + strand, within tdcG at 258.717 kb on - strand, within tdcG at 258.731 kb on - strand, within tdcG at 258.847 kb on + strand, within tdcG at 258.847 kb on + strand, within tdcG at 258.848 kb on - strand, within tdcG at 258.848 kb on - strand, within tdcG at 258.850 kb on + strand, within tdcG at 258.851 kb on - strand, within tdcG at 258.851 kb on - strand, within tdcG at 258.857 kb on + strand, within tdcG at 258.861 kb on + strand, within tdcG at 258.939 kb on - strand, within tdcG at 259.011 kb on + strand, within tdcG at 259.019 kb on + strand, within tdcG at 259.020 kb on - strand, within tdcG at 259.129 kb on + strand, within tdcG at 259.145 kb on + strand at 259.146 kb on - strand at 259.165 kb on - strand at 259.165 kb on - strand at 259.190 kb on + strand at 259.271 kb on + strand at 259.350 kb on + strand at 259.351 kb on - strand at 259.357 kb on + strand at 259.358 kb on - strand at 259.358 kb on - strand at 259.467 kb on + strand, within tdcF at 259.467 kb on + strand, within tdcF at 259.467 kb on + strand, within tdcF at 259.467 kb on + strand, within tdcF at 259.468 kb on - strand, within tdcF at 259.690 kb on - strand, within tdcF at 259.738 kb on + strand at 259.738 kb on + strand at 259.739 kb on - strand at 259.767 kb on - strand at 259.958 kb on - strand at 259.988 kb on + strand, within tdcE at 259.989 kb on - strand, within tdcE at 260.038 kb on + strand, within tdcE at 260.060 kb on - strand, within tdcE at 260.216 kb on + strand, within tdcE
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 256,926 - dlsT BNILDI_01315 0.46 +0.3 256,969 + dlsT BNILDI_01315 0.50 +0.0 256,970 - dlsT BNILDI_01315 0.50 -0.4 256,972 + dlsT BNILDI_01315 0.50 +0.1 256,973 - dlsT BNILDI_01315 0.50 +0.4 257,023 - dlsT BNILDI_01315 0.54 +0.1 257,166 + dlsT BNILDI_01315 0.64 +1.2 257,166 + dlsT BNILDI_01315 0.64 +0.2 257,209 + dlsT BNILDI_01315 0.68 -0.2 257,209 + dlsT BNILDI_01315 0.68 -0.6 257,210 - dlsT BNILDI_01315 0.68 +0.4 257,210 - dlsT BNILDI_01315 0.68 +0.6 257,218 - dlsT BNILDI_01315 0.68 +0.7 257,218 - dlsT BNILDI_01315 0.68 -0.6 257,283 + dlsT BNILDI_01315 0.73 -1.0 257,294 + dlsT BNILDI_01315 0.74 +0.2 257,318 + dlsT BNILDI_01315 0.76 +0.3 257,318 + dlsT BNILDI_01315 0.76 +0.2 257,319 - dlsT BNILDI_01315 0.76 -0.4 257,344 - dlsT BNILDI_01315 0.78 -1.1 257,351 - dlsT BNILDI_01315 0.78 -0.2 257,374 + dlsT BNILDI_01315 0.80 +0.6 257,375 - dlsT BNILDI_01315 0.80 +1.8 257,380 + dlsT BNILDI_01315 0.81 -0.4 257,380 + dlsT BNILDI_01315 0.81 -0.7 257,381 - dlsT BNILDI_01315 0.81 -0.1 257,400 + dlsT BNILDI_01315 0.82 +0.7 257,401 - dlsT BNILDI_01315 0.82 -2.4 257,401 - dlsT BNILDI_01315 0.82 -1.2 257,512 + +0.3 257,512 + -0.9 257,513 - +2.3 257,533 + -0.7 257,708 - +1.0 257,963 - -1.0 257,966 + +0.3 257,976 - +0.8 257,993 - -0.0 257,993 - -0.1 258,012 - +0.6 258,092 + tdcG BNILDI_01320 0.13 -0.8 258,115 - tdcG BNILDI_01320 0.15 -0.1 258,183 + tdcG BNILDI_01320 0.20 +0.7 258,299 + tdcG BNILDI_01320 0.28 -0.3 258,302 - tdcG BNILDI_01320 0.28 +0.4 258,379 + tdcG BNILDI_01320 0.34 +1.0 258,478 + tdcG BNILDI_01320 0.41 +0.4 258,478 + tdcG BNILDI_01320 0.41 -0.9 258,525 - tdcG BNILDI_01320 0.45 +1.2 258,687 + tdcG BNILDI_01320 0.57 -0.7 258,716 + tdcG BNILDI_01320 0.59 +0.2 258,717 - tdcG BNILDI_01320 0.59 -0.3 258,731 - tdcG BNILDI_01320 0.60 +0.7 258,847 + tdcG BNILDI_01320 0.68 -0.2 258,847 + tdcG BNILDI_01320 0.68 -0.6 258,848 - tdcG BNILDI_01320 0.68 -1.2 258,848 - tdcG BNILDI_01320 0.68 +0.8 258,850 + tdcG BNILDI_01320 0.69 -1.4 258,851 - tdcG BNILDI_01320 0.69 +1.1 258,851 - tdcG BNILDI_01320 0.69 +1.2 258,857 + tdcG BNILDI_01320 0.69 +1.6 258,861 + tdcG BNILDI_01320 0.69 -0.2 258,939 - tdcG BNILDI_01320 0.75 +0.6 259,011 + tdcG BNILDI_01320 0.80 -0.2 259,019 + tdcG BNILDI_01320 0.81 +0.6 259,020 - tdcG BNILDI_01320 0.81 -0.7 259,129 + tdcG BNILDI_01320 0.89 +1.5 259,145 + +0.4 259,146 - +0.1 259,165 - +0.7 259,165 - -0.2 259,190 + +0.4 259,271 + +0.8 259,350 + -0.1 259,351 - +0.3 259,357 + -0.0 259,358 - +1.5 259,358 - -1.6 259,467 + tdcF BNILDI_01325 0.30 -1.5 259,467 + tdcF BNILDI_01325 0.30 +1.2 259,467 + tdcF BNILDI_01325 0.30 +0.3 259,467 + tdcF BNILDI_01325 0.30 -0.2 259,468 - tdcF BNILDI_01325 0.31 +0.4 259,690 - tdcF BNILDI_01325 0.87 -0.2 259,738 + -1.2 259,738 + -0.2 259,739 - +0.2 259,767 - +0.7 259,958 - +0.4 259,988 + tdcE BNILDI_01330 0.10 +1.7 259,989 - tdcE BNILDI_01330 0.10 +0.4 260,038 + tdcE BNILDI_01330 0.12 -0.2 260,060 - tdcE BNILDI_01330 0.13 -1.1 260,216 + tdcE BNILDI_01330 0.20 +0.0
Or see this region's nucleotide sequence