Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqjD and yqjE are separated by 2 nucleotides yqjE and yqjK overlap by 11 nucleotides yqjK and doxX are separated by 95 nucleotides doxX and yqjG are separated by 69 nucleotides
BNILDI_01250: yqjD - Uncharacterized protein YqjD, at 248,150 to 248,455
yqjD
BNILDI_01255: yqjE - Inner membrane protein YqjE, at 248,458 to 248,862
yqjE
BNILDI_01260: yqjK - Uncharacterized protein YqjK, at 248,852 to 249,151
yqjK
BNILDI_01265: doxX - DoxX family protein, at 249,247 to 249,729
doxX
BNILDI_01270: yqjG - glutathionyl-hydroquinone reductase YqjG, at 249,799 to 250,785
yqjG
Position (kb) 249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 248.372 kb on + strand, within yqjD at 248.373 kb on - strand, within yqjD at 248.373 kb on - strand, within yqjD at 248.424 kb on + strand, within yqjD at 248.458 kb on - strand at 248.652 kb on + strand, within yqjE at 248.652 kb on + strand, within yqjE at 248.673 kb on + strand, within yqjE at 248.748 kb on - strand, within yqjE at 248.772 kb on + strand, within yqjE at 248.772 kb on + strand, within yqjE at 248.802 kb on + strand, within yqjE at 248.860 kb on + strand at 248.861 kb on - strand at 248.881 kb on + strand at 248.983 kb on + strand, within yqjK at 248.991 kb on + strand, within yqjK at 248.991 kb on + strand, within yqjK at 248.991 kb on + strand, within yqjK at 249.055 kb on + strand, within yqjK at 249.055 kb on + strand, within yqjK at 249.056 kb on - strand, within yqjK at 249.058 kb on + strand, within yqjK at 249.058 kb on + strand, within yqjK at 249.058 kb on + strand, within yqjK at 249.058 kb on + strand, within yqjK at 249.149 kb on + strand at 249.363 kb on - strand, within doxX at 249.445 kb on + strand, within doxX at 249.445 kb on + strand, within doxX at 249.445 kb on + strand, within doxX at 249.446 kb on - strand, within doxX at 249.447 kb on + strand, within doxX at 249.448 kb on - strand, within doxX at 249.571 kb on - strand, within doxX at 249.695 kb on - strand at 249.695 kb on - strand at 249.695 kb on - strand at 249.697 kb on - strand at 249.718 kb on - strand at 249.740 kb on + strand at 249.740 kb on + strand at 249.740 kb on + strand at 249.740 kb on + strand at 249.740 kb on + strand at 249.741 kb on - strand at 249.741 kb on - strand at 249.971 kb on - strand, within yqjG at 250.123 kb on - strand, within yqjG at 250.123 kb on - strand, within yqjG at 250.123 kb on - strand, within yqjG at 250.123 kb on - strand, within yqjG at 250.123 kb on - strand, within yqjG at 250.177 kb on + strand, within yqjG at 250.178 kb on - strand, within yqjG at 250.192 kb on - strand, within yqjG at 250.309 kb on + strand, within yqjG at 250.381 kb on + strand, within yqjG at 250.383 kb on + strand, within yqjG at 250.415 kb on - strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.555 kb on + strand, within yqjG at 250.556 kb on - strand, within yqjG at 250.556 kb on - strand, within yqjG at 250.556 kb on - strand, within yqjG at 250.556 kb on - strand, within yqjG at 250.578 kb on + strand, within yqjG at 250.578 kb on + strand, within yqjG at 250.597 kb on + strand, within yqjG at 250.609 kb on + strand, within yqjG at 250.630 kb on + strand, within yqjG
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 248,372 + yqjD BNILDI_01250 0.73 +0.8 248,373 - yqjD BNILDI_01250 0.73 -0.7 248,373 - yqjD BNILDI_01250 0.73 +2.3 248,424 + yqjD BNILDI_01250 0.90 +0.0 248,458 - -0.1 248,652 + yqjE BNILDI_01255 0.48 +0.6 248,652 + yqjE BNILDI_01255 0.48 -0.2 248,673 + yqjE BNILDI_01255 0.53 +0.3 248,748 - yqjE BNILDI_01255 0.72 +0.9 248,772 + yqjE BNILDI_01255 0.78 +0.3 248,772 + yqjE BNILDI_01255 0.78 -0.7 248,802 + yqjE BNILDI_01255 0.85 -1.9 248,860 + +0.5 248,861 - +0.0 248,881 + +1.6 248,983 + yqjK BNILDI_01260 0.44 +0.5 248,991 + yqjK BNILDI_01260 0.46 +0.6 248,991 + yqjK BNILDI_01260 0.46 +0.4 248,991 + yqjK BNILDI_01260 0.46 -0.7 249,055 + yqjK BNILDI_01260 0.68 -0.2 249,055 + yqjK BNILDI_01260 0.68 +0.7 249,056 - yqjK BNILDI_01260 0.68 -1.6 249,058 + yqjK BNILDI_01260 0.69 -0.7 249,058 + yqjK BNILDI_01260 0.69 -1.1 249,058 + yqjK BNILDI_01260 0.69 +0.5 249,058 + yqjK BNILDI_01260 0.69 -0.5 249,149 + -2.5 249,363 - doxX BNILDI_01265 0.24 -0.4 249,445 + doxX BNILDI_01265 0.41 +0.4 249,445 + doxX BNILDI_01265 0.41 +0.2 249,445 + doxX BNILDI_01265 0.41 -0.5 249,446 - doxX BNILDI_01265 0.41 +1.1 249,447 + doxX BNILDI_01265 0.41 +1.6 249,448 - doxX BNILDI_01265 0.42 +0.6 249,571 - doxX BNILDI_01265 0.67 -0.3 249,695 - -0.3 249,695 - -0.8 249,695 - +0.6 249,697 - -2.0 249,718 - +0.1 249,740 + +0.1 249,740 + -0.6 249,740 + +0.6 249,740 + -2.9 249,740 + +0.2 249,741 - +0.0 249,741 - +0.2 249,971 - yqjG BNILDI_01270 0.17 -0.0 250,123 - yqjG BNILDI_01270 0.33 +1.3 250,123 - yqjG BNILDI_01270 0.33 +0.3 250,123 - yqjG BNILDI_01270 0.33 +1.8 250,123 - yqjG BNILDI_01270 0.33 +1.0 250,123 - yqjG BNILDI_01270 0.33 +0.1 250,177 + yqjG BNILDI_01270 0.38 -0.5 250,178 - yqjG BNILDI_01270 0.38 -0.2 250,192 - yqjG BNILDI_01270 0.40 +0.0 250,309 + yqjG BNILDI_01270 0.52 -0.8 250,381 + yqjG BNILDI_01270 0.59 -0.4 250,383 + yqjG BNILDI_01270 0.59 +0.2 250,415 - yqjG BNILDI_01270 0.62 -0.3 250,555 + yqjG BNILDI_01270 0.77 +0.2 250,555 + yqjG BNILDI_01270 0.77 +1.0 250,555 + yqjG BNILDI_01270 0.77 -0.0 250,555 + yqjG BNILDI_01270 0.77 +1.0 250,555 + yqjG BNILDI_01270 0.77 +2.9 250,555 + yqjG BNILDI_01270 0.77 +0.3 250,555 + yqjG BNILDI_01270 0.77 -0.2 250,555 + yqjG BNILDI_01270 0.77 -1.1 250,556 - yqjG BNILDI_01270 0.77 +0.3 250,556 - yqjG BNILDI_01270 0.77 +0.4 250,556 - yqjG BNILDI_01270 0.77 +1.2 250,556 - yqjG BNILDI_01270 0.77 -0.2 250,578 + yqjG BNILDI_01270 0.79 +1.2 250,578 + yqjG BNILDI_01270 0.79 -0.1 250,597 + yqjG BNILDI_01270 0.81 +0.1 250,609 + yqjG BNILDI_01270 0.82 -1.1 250,630 + yqjG BNILDI_01270 0.84 +0.8
Or see this region's nucleotide sequence