Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ttdA and ttdB overlap by 4 nucleotides ttdB and ttdT are separated by 48 nucleotides ttdT and tsaD are separated by 42 nucleotides
BNILDI_01040: ttdA - L(+)-tartrate dehydratase subunit alpha, at 200,106 to 201,017
ttdA
BNILDI_01045: ttdB - L(+)-tartrate dehydratase subunit beta, at 201,014 to 201,619
ttdB
BNILDI_01050: ttdT - L-tartrate/succinate antiporter, at 201,668 to 203,131
ttdT
BNILDI_01055: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 203,174 to 204,187
tsaD
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 200.800 kb on + strand, within ttdA at 200.800 kb on + strand, within ttdA at 201.061 kb on + strand at 201.283 kb on + strand, within ttdB at 201.608 kb on + strand at 201.608 kb on + strand at 201.608 kb on + strand at 201.609 kb on - strand at 201.617 kb on + strand at 201.617 kb on + strand at 201.617 kb on + strand at 201.618 kb on - strand at 201.618 kb on - strand at 201.662 kb on - strand at 201.662 kb on - strand at 201.662 kb on - strand at 201.724 kb on + strand at 201.763 kb on + strand at 201.764 kb on - strand at 201.764 kb on - strand at 201.764 kb on - strand at 201.787 kb on + strand at 201.787 kb on + strand at 201.850 kb on + strand, within ttdT at 201.850 kb on + strand, within ttdT at 201.919 kb on + strand, within ttdT at 201.919 kb on + strand, within ttdT at 201.920 kb on - strand, within ttdT at 202.162 kb on + strand, within ttdT at 202.163 kb on - strand, within ttdT at 202.163 kb on - strand, within ttdT at 202.321 kb on - strand, within ttdT at 202.396 kb on + strand, within ttdT at 202.430 kb on + strand, within ttdT at 202.430 kb on + strand, within ttdT at 202.431 kb on - strand, within ttdT at 202.431 kb on - strand, within ttdT at 202.583 kb on + strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.666 kb on + strand, within ttdT at 202.669 kb on + strand, within ttdT at 202.744 kb on + strand, within ttdT at 202.745 kb on - strand, within ttdT at 202.830 kb on - strand, within ttdT at 202.865 kb on + strand, within ttdT at 202.865 kb on + strand, within ttdT at 202.865 kb on + strand, within ttdT at 202.978 kb on + strand, within ttdT at 202.979 kb on - strand, within ttdT at 202.986 kb on - strand at 202.986 kb on - strand at 202.986 kb on - strand at 203.012 kb on + strand at 203.013 kb on - strand at 203.074 kb on - strand at 203.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 200,800 + ttdA BNILDI_01040 0.76 -0.2 200,800 + ttdA BNILDI_01040 0.76 -0.4 201,061 + -1.7 201,283 + ttdB BNILDI_01045 0.44 -0.3 201,608 + +0.9 201,608 + -0.1 201,608 + +0.4 201,609 - +0.2 201,617 + -1.0 201,617 + +0.1 201,617 + -0.4 201,618 - -0.0 201,618 - -0.7 201,662 - +0.9 201,662 - -0.2 201,662 - -1.8 201,724 + -1.7 201,763 + -1.1 201,764 - +0.3 201,764 - -0.6 201,764 - +0.8 201,787 + +1.0 201,787 + -0.2 201,850 + ttdT BNILDI_01050 0.12 +0.2 201,850 + ttdT BNILDI_01050 0.12 -0.5 201,919 + ttdT BNILDI_01050 0.17 +0.5 201,919 + ttdT BNILDI_01050 0.17 -0.2 201,920 - ttdT BNILDI_01050 0.17 -0.6 202,162 + ttdT BNILDI_01050 0.34 +1.2 202,163 - ttdT BNILDI_01050 0.34 +0.4 202,163 - ttdT BNILDI_01050 0.34 -0.4 202,321 - ttdT BNILDI_01050 0.45 +1.4 202,396 + ttdT BNILDI_01050 0.50 +0.3 202,430 + ttdT BNILDI_01050 0.52 -0.5 202,430 + ttdT BNILDI_01050 0.52 -0.0 202,431 - ttdT BNILDI_01050 0.52 -2.1 202,431 - ttdT BNILDI_01050 0.52 +0.2 202,583 + ttdT BNILDI_01050 0.62 -0.0 202,584 - ttdT BNILDI_01050 0.63 +0.3 202,584 - ttdT BNILDI_01050 0.63 -0.1 202,584 - ttdT BNILDI_01050 0.63 +0.5 202,584 - ttdT BNILDI_01050 0.63 -2.1 202,666 + ttdT BNILDI_01050 0.68 -1.8 202,669 + ttdT BNILDI_01050 0.68 -0.3 202,744 + ttdT BNILDI_01050 0.73 -0.1 202,745 - ttdT BNILDI_01050 0.74 +1.4 202,830 - ttdT BNILDI_01050 0.79 -1.1 202,865 + ttdT BNILDI_01050 0.82 +0.1 202,865 + ttdT BNILDI_01050 0.82 -0.2 202,865 + ttdT BNILDI_01050 0.82 -0.1 202,978 + ttdT BNILDI_01050 0.89 -0.3 202,979 - ttdT BNILDI_01050 0.90 -0.1 202,986 - -0.8 202,986 - -0.8 202,986 - -0.4 203,012 + +0.0 203,013 - +0.2 203,074 - -2.9 203,129 + -0.3
Or see this region's nucleotide sequence