Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exbD and exbB are separated by 6 nucleotides exbB and metC are separated by 251 nucleotides metC and yghB are separated by 139 nucleotides yghB and yqhC are separated by 39 nucleotides
BNILDI_00770: exbD - TonB system transport protein ExbD, at 148,049 to 148,474
exbD
BNILDI_00775: exbB - tol-pal system-associated acyl-CoA thioesterase, at 148,481 to 149,215
exbB
BNILDI_00780: metC - cystathionine beta-lyase, at 149,467 to 150,654
metC
BNILDI_00785: yghB - Inner membrane protein YghB, at 150,794 to 151,453
yghB
BNILDI_00790: yqhC - DNA-binding transcriptional regulator YqhC, at 151,493 to 152,449
yqhC
Position (kb) 149
150
151 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 148.482 kb on + strand at 148.569 kb on - strand, within exbB at 148.569 kb on - strand, within exbB at 148.625 kb on + strand, within exbB at 148.626 kb on - strand, within exbB at 148.632 kb on + strand, within exbB at 148.632 kb on + strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.679 kb on + strand, within exbB at 148.885 kb on + strand, within exbB at 148.886 kb on - strand, within exbB at 148.886 kb on - strand, within exbB at 148.897 kb on + strand, within exbB at 149.078 kb on + strand, within exbB at 149.079 kb on - strand, within exbB at 149.079 kb on - strand, within exbB at 149.147 kb on - strand at 149.169 kb on + strand at 149.170 kb on - strand at 149.170 kb on - strand at 149.173 kb on + strand at 149.206 kb on + strand at 149.220 kb on + strand at 149.221 kb on - strand at 149.253 kb on + strand at 149.253 kb on + strand at 149.254 kb on - strand at 149.256 kb on + strand at 149.256 kb on + strand at 149.257 kb on - strand at 149.257 kb on - strand at 149.487 kb on + strand at 149.541 kb on + strand at 149.542 kb on - strand at 149.667 kb on - strand, within metC at 149.739 kb on + strand, within metC at 149.740 kb on - strand, within metC at 150.012 kb on + strand, within metC at 150.012 kb on + strand, within metC at 150.013 kb on - strand, within metC at 150.079 kb on - strand, within metC at 150.097 kb on + strand, within metC at 150.097 kb on + strand, within metC at 150.179 kb on - strand, within metC at 150.214 kb on + strand, within metC at 150.214 kb on + strand, within metC at 150.214 kb on + strand, within metC at 150.214 kb on + strand, within metC at 150.215 kb on - strand, within metC at 150.216 kb on + strand, within metC at 150.216 kb on + strand, within metC at 150.216 kb on + strand, within metC at 150.216 kb on + strand, within metC at 150.216 kb on + strand, within metC at 150.216 kb on + strand, within metC at 150.216 kb on + strand, within metC at 150.217 kb on - strand, within metC at 150.217 kb on - strand, within metC at 150.219 kb on - strand, within metC at 150.242 kb on + strand, within metC at 150.243 kb on - strand, within metC at 150.243 kb on - strand, within metC at 150.325 kb on - strand, within metC at 150.411 kb on + strand, within metC at 150.464 kb on + strand, within metC at 150.478 kb on + strand, within metC at 150.479 kb on - strand, within metC at 150.528 kb on + strand, within metC at 150.650 kb on + strand at 150.687 kb on + strand at 150.688 kb on - strand at 150.688 kb on - strand at 150.749 kb on - strand at 150.761 kb on + strand at 150.761 kb on + strand at 150.811 kb on + strand at 150.811 kb on + strand at 150.812 kb on - strand at 150.862 kb on + strand, within yghB at 150.862 kb on + strand, within yghB at 150.862 kb on + strand, within yghB at 150.878 kb on + strand, within yghB at 150.878 kb on + strand, within yghB at 150.878 kb on + strand, within yghB at 150.879 kb on - strand, within yghB at 150.879 kb on - strand, within yghB at 151.047 kb on + strand, within yghB at 151.047 kb on + strand, within yghB at 151.052 kb on + strand, within yghB at 151.055 kb on - strand, within yghB at 151.055 kb on - strand, within yghB at 151.117 kb on + strand, within yghB at 151.117 kb on + strand, within yghB at 151.118 kb on - strand, within yghB at 151.122 kb on - strand, within yghB at 151.269 kb on + strand, within yghB at 151.317 kb on + strand, within yghB at 151.317 kb on + strand, within yghB at 151.317 kb on + strand, within yghB at 151.317 kb on + strand, within yghB at 151.318 kb on - strand, within yghB at 151.356 kb on + strand, within yghB at 151.491 kb on - strand at 151.494 kb on + strand at 151.552 kb on - strand at 151.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 148,482 + +0.5 148,569 - exbB BNILDI_00775 0.12 +1.0 148,569 - exbB BNILDI_00775 0.12 +1.2 148,625 + exbB BNILDI_00775 0.20 +1.0 148,626 - exbB BNILDI_00775 0.20 +0.4 148,632 + exbB BNILDI_00775 0.21 -0.7 148,632 + exbB BNILDI_00775 0.21 -1.4 148,633 - exbB BNILDI_00775 0.21 -0.0 148,633 - exbB BNILDI_00775 0.21 +0.4 148,633 - exbB BNILDI_00775 0.21 +1.5 148,633 - exbB BNILDI_00775 0.21 -2.1 148,633 - exbB BNILDI_00775 0.21 +0.1 148,679 + exbB BNILDI_00775 0.27 -0.6 148,885 + exbB BNILDI_00775 0.55 +0.2 148,886 - exbB BNILDI_00775 0.55 -1.8 148,886 - exbB BNILDI_00775 0.55 -0.4 148,897 + exbB BNILDI_00775 0.57 +1.0 149,078 + exbB BNILDI_00775 0.81 +0.6 149,079 - exbB BNILDI_00775 0.81 -0.2 149,079 - exbB BNILDI_00775 0.81 +0.0 149,147 - -0.2 149,169 + +0.6 149,170 - +0.0 149,170 - -0.2 149,173 + -0.8 149,206 + +0.9 149,220 + -1.7 149,221 - +0.7 149,253 + +0.1 149,253 + -1.1 149,254 - +0.3 149,256 + -0.0 149,256 + +0.3 149,257 - +0.2 149,257 - +0.5 149,487 + -2.9 149,541 + -2.6 149,542 - -3.5 149,667 - metC BNILDI_00780 0.17 -3.6 149,739 + metC BNILDI_00780 0.23 -1.3 149,740 - metC BNILDI_00780 0.23 -2.7 150,012 + metC BNILDI_00780 0.46 -3.8 150,012 + metC BNILDI_00780 0.46 -3.4 150,013 - metC BNILDI_00780 0.46 -3.4 150,079 - metC BNILDI_00780 0.52 -3.3 150,097 + metC BNILDI_00780 0.53 -1.8 150,097 + metC BNILDI_00780 0.53 -1.1 150,179 - metC BNILDI_00780 0.60 -3.6 150,214 + metC BNILDI_00780 0.63 -3.7 150,214 + metC BNILDI_00780 0.63 -4.3 150,214 + metC BNILDI_00780 0.63 -4.3 150,214 + metC BNILDI_00780 0.63 -2.4 150,215 - metC BNILDI_00780 0.63 -1.9 150,216 + metC BNILDI_00780 0.63 -2.7 150,216 + metC BNILDI_00780 0.63 -2.4 150,216 + metC BNILDI_00780 0.63 -3.2 150,216 + metC BNILDI_00780 0.63 -2.0 150,216 + metC BNILDI_00780 0.63 -2.0 150,216 + metC BNILDI_00780 0.63 -4.4 150,216 + metC BNILDI_00780 0.63 -0.3 150,217 - metC BNILDI_00780 0.63 -2.9 150,217 - metC BNILDI_00780 0.63 -2.2 150,219 - metC BNILDI_00780 0.63 -1.0 150,242 + metC BNILDI_00780 0.65 -0.9 150,243 - metC BNILDI_00780 0.65 -2.8 150,243 - metC BNILDI_00780 0.65 -2.2 150,325 - metC BNILDI_00780 0.72 -3.1 150,411 + metC BNILDI_00780 0.79 -3.5 150,464 + metC BNILDI_00780 0.84 -3.1 150,478 + metC BNILDI_00780 0.85 -1.6 150,479 - metC BNILDI_00780 0.85 -3.1 150,528 + metC BNILDI_00780 0.89 -4.2 150,650 + -0.7 150,687 + -2.9 150,688 - +1.4 150,688 - -2.1 150,749 - +0.5 150,761 + +0.0 150,761 + +0.0 150,811 + +0.7 150,811 + +0.2 150,812 - -0.1 150,862 + yghB BNILDI_00785 0.10 +0.3 150,862 + yghB BNILDI_00785 0.10 +0.3 150,862 + yghB BNILDI_00785 0.10 -0.7 150,878 + yghB BNILDI_00785 0.13 +0.1 150,878 + yghB BNILDI_00785 0.13 +0.3 150,878 + yghB BNILDI_00785 0.13 +0.2 150,879 - yghB BNILDI_00785 0.13 +0.8 150,879 - yghB BNILDI_00785 0.13 +0.7 151,047 + yghB BNILDI_00785 0.38 +0.4 151,047 + yghB BNILDI_00785 0.38 -0.2 151,052 + yghB BNILDI_00785 0.39 +0.3 151,055 - yghB BNILDI_00785 0.40 +0.3 151,055 - yghB BNILDI_00785 0.40 +1.1 151,117 + yghB BNILDI_00785 0.49 +0.1 151,117 + yghB BNILDI_00785 0.49 +0.6 151,118 - yghB BNILDI_00785 0.49 -0.2 151,122 - yghB BNILDI_00785 0.50 -1.1 151,269 + yghB BNILDI_00785 0.72 -0.6 151,317 + yghB BNILDI_00785 0.79 -0.0 151,317 + yghB BNILDI_00785 0.79 +0.1 151,317 + yghB BNILDI_00785 0.79 -1.0 151,317 + yghB BNILDI_00785 0.79 -0.3 151,318 - yghB BNILDI_00785 0.79 -0.3 151,356 + yghB BNILDI_00785 0.85 +0.2 151,491 - -0.2 151,494 + +0.7 151,552 - -0.1 151,571 - +0.0
Or see this region's nucleotide sequence