Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_00535 and yghD are separated by 414 nucleotides yghD and BNILDI_00545 are separated by 38 nucleotides BNILDI_00545 and gspS2 are separated by 158 nucleotides gspS2 and pppA are separated by 65 nucleotides
BNILDI_00535: BNILDI_00535 - type II toxin-antitoxin system RelE/ParE family toxin, at 100,030 to 100,356
_00535
BNILDI_00540: yghD - GspM family type II secretion system protein YghD, at 100,771 to 101,307
yghD
BNILDI_00545: BNILDI_00545 - Type II secretion protein GspC, at 101,346 to 101,711
_00545
BNILDI_00550: gspS2 - Pilotin AspS 2, at 101,870 to 102,280
gspS2
BNILDI_00555: pppA - prepilin peptidase PppA, at 102,346 to 103,155
pppA
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 100.407 kb on - strand at 100.497 kb on + strand at 100.497 kb on + strand at 100.500 kb on - strand at 100.701 kb on - strand at 100.702 kb on + strand at 100.756 kb on + strand at 100.757 kb on - strand at 100.767 kb on + strand at 100.772 kb on + strand at 100.930 kb on - strand, within yghD at 101.043 kb on + strand, within yghD at 101.150 kb on + strand, within yghD at 101.150 kb on + strand, within yghD at 101.151 kb on - strand, within yghD at 101.151 kb on - strand, within yghD at 101.151 kb on - strand, within yghD at 101.151 kb on - strand, within yghD at 101.188 kb on + strand, within yghD at 101.311 kb on - strand at 101.360 kb on + strand at 101.401 kb on + strand, within BNILDI_00545 at 101.401 kb on + strand, within BNILDI_00545 at 101.402 kb on - strand, within BNILDI_00545 at 101.478 kb on - strand, within BNILDI_00545 at 101.700 kb on - strand at 101.856 kb on - strand at 101.935 kb on + strand, within gspS2 at 102.070 kb on + strand, within gspS2 at 102.249 kb on - strand at 102.365 kb on + strand at 102.445 kb on + strand, within pppA at 102.446 kb on - strand, within pppA at 102.446 kb on - strand, within pppA at 102.507 kb on + strand, within pppA at 102.508 kb on - strand, within pppA at 102.508 kb on - strand, within pppA at 102.508 kb on - strand, within pppA at 102.511 kb on + strand, within pppA at 102.512 kb on - strand, within pppA at 102.512 kb on - strand, within pppA at 102.512 kb on - strand, within pppA at 102.526 kb on + strand, within pppA at 102.527 kb on - strand, within pppA at 102.529 kb on + strand, within pppA at 102.530 kb on - strand, within pppA at 102.530 kb on - strand, within pppA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 100,407 - +0.4 100,497 + +0.0 100,497 + +0.4 100,500 - -0.1 100,701 - -2.8 100,702 + +1.3 100,756 + -0.6 100,757 - -2.0 100,767 + +0.9 100,772 + +1.0 100,930 - yghD BNILDI_00540 0.30 +1.2 101,043 + yghD BNILDI_00540 0.51 -2.9 101,150 + yghD BNILDI_00540 0.71 -1.0 101,150 + yghD BNILDI_00540 0.71 -0.3 101,151 - yghD BNILDI_00540 0.71 +0.0 101,151 - yghD BNILDI_00540 0.71 +0.3 101,151 - yghD BNILDI_00540 0.71 -0.2 101,151 - yghD BNILDI_00540 0.71 -0.8 101,188 + yghD BNILDI_00540 0.78 +0.5 101,311 - -0.4 101,360 + -2.0 101,401 + BNILDI_00545 0.15 +1.1 101,401 + BNILDI_00545 0.15 +0.5 101,402 - BNILDI_00545 0.15 -2.6 101,478 - BNILDI_00545 0.36 +0.8 101,700 - -1.3 101,856 - +1.3 101,935 + gspS2 BNILDI_00550 0.16 -0.2 102,070 + gspS2 BNILDI_00550 0.49 +0.0 102,249 - -0.0 102,365 + -0.6 102,445 + pppA BNILDI_00555 0.12 +0.4 102,446 - pppA BNILDI_00555 0.12 +1.3 102,446 - pppA BNILDI_00555 0.12 -0.3 102,507 + pppA BNILDI_00555 0.20 +0.3 102,508 - pppA BNILDI_00555 0.20 -0.3 102,508 - pppA BNILDI_00555 0.20 +1.1 102,508 - pppA BNILDI_00555 0.20 +0.1 102,511 + pppA BNILDI_00555 0.20 +0.3 102,512 - pppA BNILDI_00555 0.20 -0.3 102,512 - pppA BNILDI_00555 0.20 +0.6 102,512 - pppA BNILDI_00555 0.20 +1.7 102,526 + pppA BNILDI_00555 0.22 -0.9 102,527 - pppA BNILDI_00555 0.22 +0.2 102,529 + pppA BNILDI_00555 0.23 +0.3 102,530 - pppA BNILDI_00555 0.23 -0.4 102,530 - pppA BNILDI_00555 0.23 +1.2
Or see this region's nucleotide sequence