Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_00525 and BNILDI_00530 are separated by 71 nucleotides BNILDI_00530 and BNILDI_00535 overlap by 4 nucleotides BNILDI_00535 and yghD are separated by 414 nucleotides
BNILDI_00525: BNILDI_00525 - restriction endonuclease subunit M, at 98,832 to 99,698
_00525
BNILDI_00530: BNILDI_00530 - type II toxin-antitoxin system ParD family antitoxin, at 99,770 to 100,033
_00530
BNILDI_00535: BNILDI_00535 - type II toxin-antitoxin system RelE/ParE family toxin, at 100,030 to 100,356
_00535
BNILDI_00540: yghD - GspM family type II secretion system protein YghD, at 100,771 to 101,307
yghD
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 98.809 kb on - strand at 98.832 kb on - strand at 98.885 kb on + strand at 98.930 kb on + strand, within BNILDI_00525 at 98.930 kb on + strand, within BNILDI_00525 at 98.954 kb on + strand, within BNILDI_00525 at 99.173 kb on + strand, within BNILDI_00525 at 99.402 kb on - strand, within BNILDI_00525 at 99.450 kb on + strand, within BNILDI_00525 at 99.450 kb on + strand, within BNILDI_00525 at 99.450 kb on + strand, within BNILDI_00525 at 99.451 kb on - strand, within BNILDI_00525 at 99.543 kb on + strand, within BNILDI_00525 at 99.544 kb on - strand, within BNILDI_00525 at 99.570 kb on + strand, within BNILDI_00525 at 99.571 kb on - strand, within BNILDI_00525 at 99.636 kb on - strand at 99.636 kb on - strand at 99.638 kb on + strand at 99.711 kb on - strand at 99.976 kb on - strand, within BNILDI_00530 at 99.999 kb on - strand, within BNILDI_00530 at 100.076 kb on + strand, within BNILDI_00535 at 100.077 kb on - strand, within BNILDI_00535 at 100.194 kb on - strand, within BNILDI_00535 at 100.275 kb on + strand, within BNILDI_00535 at 100.275 kb on + strand, within BNILDI_00535 at 100.276 kb on - strand, within BNILDI_00535 at 100.308 kb on - strand, within BNILDI_00535 at 100.407 kb on - strand at 100.497 kb on + strand at 100.497 kb on + strand at 100.500 kb on - strand at 100.701 kb on - strand at 100.702 kb on + strand at 100.756 kb on + strand at 100.757 kb on - strand at 100.767 kb on + strand at 100.772 kb on + strand at 100.930 kb on - strand, within yghD
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 98,809 - +0.8 98,832 - +1.2 98,885 + +0.2 98,930 + BNILDI_00525 0.11 -0.5 98,930 + BNILDI_00525 0.11 +0.5 98,954 + BNILDI_00525 0.14 -0.2 99,173 + BNILDI_00525 0.39 -0.5 99,402 - BNILDI_00525 0.66 -2.1 99,450 + BNILDI_00525 0.71 -0.0 99,450 + BNILDI_00525 0.71 +0.1 99,450 + BNILDI_00525 0.71 +0.7 99,451 - BNILDI_00525 0.71 -0.4 99,543 + BNILDI_00525 0.82 +1.0 99,544 - BNILDI_00525 0.82 +0.3 99,570 + BNILDI_00525 0.85 -0.3 99,571 - BNILDI_00525 0.85 -0.6 99,636 - +1.2 99,636 - -0.7 99,638 + -0.7 99,711 - -0.9 99,976 - BNILDI_00530 0.78 -0.3 99,999 - BNILDI_00530 0.87 -0.3 100,076 + BNILDI_00535 0.14 -0.5 100,077 - BNILDI_00535 0.14 +1.3 100,194 - BNILDI_00535 0.50 +0.5 100,275 + BNILDI_00535 0.75 +0.7 100,275 + BNILDI_00535 0.75 +0.8 100,276 - BNILDI_00535 0.75 -0.1 100,308 - BNILDI_00535 0.85 -1.4 100,407 - +0.4 100,497 + +0.0 100,497 + +0.4 100,500 - -0.1 100,701 - -2.8 100,702 + +1.3 100,756 + -0.6 100,757 - -2.0 100,767 + +0.9 100,772 + +1.0 100,930 - yghD BNILDI_00540 0.30 +1.2
Or see this region's nucleotide sequence