Strain Fitness in Escherichia coli ECRC62 around BNILDI_00295

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinB and lafU are separated by 70 nucleotideslafU and lfhA are separated by 94 nucleotides BNILDI_00290: dinB - DNA polymerase IV, at 63,178 to 64,233 dinB BNILDI_00295: lafU - putative lateral flagellar export/assembly protein LafU, at 64,304 to 64,939 lafU BNILDI_00300: lfhA - Putative truncated flagellar export/assembly protein LfhA, at 65,034 to 66,773 lfhA Position (kb) 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 63.364 kb on + strand, within dinBat 63.477 kb on + strand, within dinBat 63.597 kb on + strand, within dinBat 63.715 kb on + strand, within dinBat 63.742 kb on - strand, within dinBat 63.765 kb on + strand, within dinBat 63.765 kb on + strand, within dinBat 63.766 kb on - strand, within dinBat 63.917 kb on + strand, within dinBat 63.956 kb on + strand, within dinBat 64.071 kb on + strand, within dinBat 64.076 kb on - strand, within dinBat 64.149 kb on + strandat 64.150 kb on - strandat 64.260 kb on - strandat 64.389 kb on + strand, within lafUat 64.390 kb on - strand, within lafUat 64.390 kb on - strand, within lafUat 64.390 kb on - strand, within lafUat 64.396 kb on - strand, within lafUat 64.396 kb on - strand, within lafUat 64.429 kb on + strand, within lafUat 64.502 kb on + strand, within lafUat 64.517 kb on - strand, within lafUat 64.594 kb on - strand, within lafUat 64.597 kb on + strand, within lafUat 64.597 kb on + strand, within lafUat 64.624 kb on + strand, within lafUat 64.636 kb on + strand, within lafUat 64.733 kb on - strand, within lafUat 64.733 kb on - strand, within lafUat 64.767 kb on - strand, within lafUat 65.105 kb on + strandat 65.130 kb on - strandat 65.177 kb on + strandat 65.177 kb on + strandat 65.219 kb on + strand, within lfhAat 65.219 kb on + strand, within lfhAat 65.219 kb on + strand, within lfhAat 65.219 kb on + strand, within lfhAat 65.219 kb on + strand, within lfhAat 65.388 kb on + strand, within lfhAat 65.388 kb on + strand, within lfhAat 65.388 kb on + strand, within lfhAat 65.389 kb on - strand, within lfhAat 65.558 kb on + strand, within lfhAat 65.558 kb on + strand, within lfhAat 65.559 kb on - strand, within lfhAat 65.559 kb on - strand, within lfhAat 65.770 kb on + strand, within lfhAat 65.928 kb on + strand, within lfhAat 65.934 kb on - strand, within lfhA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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63,364 + dinB BNILDI_00290 0.18 +0.1
63,477 + dinB BNILDI_00290 0.28 +0.1
63,597 + dinB BNILDI_00290 0.40 -1.0
63,715 + dinB BNILDI_00290 0.51 -0.3
63,742 - dinB BNILDI_00290 0.53 -3.5
63,765 + dinB BNILDI_00290 0.56 +1.0
63,765 + dinB BNILDI_00290 0.56 +0.6
63,766 - dinB BNILDI_00290 0.56 -0.5
63,917 + dinB BNILDI_00290 0.70 -0.4
63,956 + dinB BNILDI_00290 0.74 +0.4
64,071 + dinB BNILDI_00290 0.85 -1.0
64,076 - dinB BNILDI_00290 0.85 -0.4
64,149 + -1.0
64,150 - -1.1
64,260 - +0.0
64,389 + lafU BNILDI_00295 0.13 +0.0
64,390 - lafU BNILDI_00295 0.14 +0.1
64,390 - lafU BNILDI_00295 0.14 -0.2
64,390 - lafU BNILDI_00295 0.14 -1.9
64,396 - lafU BNILDI_00295 0.14 -0.2
64,396 - lafU BNILDI_00295 0.14 +0.2
64,429 + lafU BNILDI_00295 0.20 -0.2
64,502 + lafU BNILDI_00295 0.31 +0.1
64,517 - lafU BNILDI_00295 0.33 -0.3
64,594 - lafU BNILDI_00295 0.46 -0.1
64,597 + lafU BNILDI_00295 0.46 +0.3
64,597 + lafU BNILDI_00295 0.46 -0.7
64,624 + lafU BNILDI_00295 0.50 -0.4
64,636 + lafU BNILDI_00295 0.52 +1.3
64,733 - lafU BNILDI_00295 0.67 +0.7
64,733 - lafU BNILDI_00295 0.67 +0.8
64,767 - lafU BNILDI_00295 0.73 +1.3
65,105 + -0.2
65,130 - +0.0
65,177 + -0.1
65,177 + -0.8
65,219 + lfhA BNILDI_00300 0.11 +0.0
65,219 + lfhA BNILDI_00300 0.11 +0.4
65,219 + lfhA BNILDI_00300 0.11 +2.2
65,219 + lfhA BNILDI_00300 0.11 -0.2
65,219 + lfhA BNILDI_00300 0.11 -0.3
65,388 + lfhA BNILDI_00300 0.20 -0.5
65,388 + lfhA BNILDI_00300 0.20 -0.1
65,388 + lfhA BNILDI_00300 0.20 -0.3
65,389 - lfhA BNILDI_00300 0.20 +0.1
65,558 + lfhA BNILDI_00300 0.30 -0.1
65,558 + lfhA BNILDI_00300 0.30 -0.3
65,559 - lfhA BNILDI_00300 0.30 +0.4
65,559 - lfhA BNILDI_00300 0.30 -0.3
65,770 + lfhA BNILDI_00300 0.42 +2.2
65,928 + lfhA BNILDI_00300 0.51 +0.7
65,934 - lfhA BNILDI_00300 0.52 -0.1

Or see this region's nucleotide sequence