Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_00230 and Thr_trna are separated by 605 nucleotides Thr_trna and proA are separated by 114 nucleotides proA and proB are separated by 11 nucleotides
BNILDI_00230: BNILDI_00230 - hypothetical protein, at 52,001 to 52,159
_00230
BNILDI_00235: Thr_trna - tRNA-Thr(cgt), at 52,765 to 52,840
_trna
BNILDI_00240: proA - glutamate-5-semialdehyde dehydrogenase, at 52,955 to 54,208
proA
BNILDI_00245: proB - Glutamate 5-kinase, at 54,220 to 55,323
proB
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 52.109 kb on - strand, within BNILDI_00230 at 52.259 kb on + strand at 52.259 kb on + strand at 52.286 kb on + strand at 52.288 kb on + strand at 52.289 kb on - strand at 52.298 kb on + strand at 52.313 kb on + strand at 52.355 kb on - strand at 52.369 kb on + strand at 52.370 kb on - strand at 52.408 kb on + strand at 52.435 kb on + strand at 52.493 kb on + strand at 52.568 kb on + strand at 52.568 kb on + strand at 52.668 kb on - strand at 52.790 kb on + strand, within Thr_trna at 52.832 kb on + strand, within Thr_trna at 52.995 kb on + strand at 52.996 kb on - strand at 53.116 kb on - strand, within proA at 53.357 kb on + strand, within proA at 53.357 kb on + strand, within proA at 53.357 kb on + strand, within proA at 53.357 kb on + strand, within proA at 53.358 kb on - strand, within proA at 53.391 kb on - strand, within proA at 53.391 kb on - strand, within proA at 53.422 kb on + strand, within proA at 53.446 kb on + strand, within proA at 53.447 kb on - strand, within proA at 53.447 kb on - strand, within proA at 53.449 kb on + strand, within proA at 53.450 kb on - strand, within proA at 53.450 kb on - strand, within proA at 53.450 kb on - strand, within proA at 53.450 kb on - strand, within proA at 53.450 kb on - strand, within proA at 53.510 kb on + strand, within proA at 53.526 kb on + strand, within proA at 53.526 kb on + strand, within proA at 53.527 kb on - strand, within proA at 53.530 kb on + strand, within proA at 53.531 kb on - strand, within proA at 53.590 kb on + strand, within proA at 53.631 kb on + strand, within proA at 53.636 kb on - strand, within proA at 53.636 kb on - strand, within proA at 53.854 kb on - strand, within proA at 53.854 kb on - strand, within proA at 54.162 kb on - strand at 54.166 kb on + strand at 54.168 kb on + strand at 54.277 kb on + strand at 54.319 kb on + strand at 54.320 kb on - strand at 54.424 kb on - strand, within proB at 54.424 kb on - strand, within proB at 54.424 kb on - strand, within proB at 54.484 kb on + strand, within proB at 54.759 kb on + strand, within proB at 54.759 kb on + strand, within proB at 54.800 kb on + strand, within proB at 54.800 kb on + strand, within proB at 54.800 kb on + strand, within proB at 54.801 kb on - strand, within proB at 54.801 kb on - strand, within proB at 54.801 kb on - strand, within proB at 54.801 kb on - strand, within proB at 54.891 kb on + strand, within proB at 54.892 kb on - strand, within proB at 55.002 kb on + strand, within proB at 55.186 kb on - strand, within proB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 52,109 - BNILDI_00230 0.68 -0.1 52,259 + +0.4 52,259 + +0.5 52,286 + -2.8 52,288 + +0.4 52,289 - -0.5 52,298 + -1.5 52,313 + -0.9 52,355 - -0.2 52,369 + -0.6 52,370 - -0.4 52,408 + -0.1 52,435 + -0.0 52,493 + +0.8 52,568 + +0.2 52,568 + +2.2 52,668 - +0.6 52,790 + Thr_trna BNILDI_00235 0.33 -0.3 52,832 + Thr_trna BNILDI_00235 0.88 +1.1 52,995 + -2.1 52,996 - -4.9 53,116 - proA BNILDI_00240 0.13 -4.0 53,357 + proA BNILDI_00240 0.32 -1.7 53,357 + proA BNILDI_00240 0.32 +0.1 53,357 + proA BNILDI_00240 0.32 -1.9 53,357 + proA BNILDI_00240 0.32 -5.2 53,358 - proA BNILDI_00240 0.32 -4.3 53,391 - proA BNILDI_00240 0.35 -2.7 53,391 - proA BNILDI_00240 0.35 -4.3 53,422 + proA BNILDI_00240 0.37 -3.6 53,446 + proA BNILDI_00240 0.39 -3.9 53,447 - proA BNILDI_00240 0.39 -3.1 53,447 - proA BNILDI_00240 0.39 -2.7 53,449 + proA BNILDI_00240 0.39 -4.2 53,450 - proA BNILDI_00240 0.39 -4.4 53,450 - proA BNILDI_00240 0.39 -2.9 53,450 - proA BNILDI_00240 0.39 -0.9 53,450 - proA BNILDI_00240 0.39 -2.7 53,450 - proA BNILDI_00240 0.39 -4.1 53,510 + proA BNILDI_00240 0.44 -3.2 53,526 + proA BNILDI_00240 0.46 -4.2 53,526 + proA BNILDI_00240 0.46 -2.6 53,527 - proA BNILDI_00240 0.46 -7.7 53,530 + proA BNILDI_00240 0.46 -2.7 53,531 - proA BNILDI_00240 0.46 -3.6 53,590 + proA BNILDI_00240 0.51 +1.0 53,631 + proA BNILDI_00240 0.54 -2.6 53,636 - proA BNILDI_00240 0.54 -4.4 53,636 - proA BNILDI_00240 0.54 -4.0 53,854 - proA BNILDI_00240 0.72 -2.9 53,854 - proA BNILDI_00240 0.72 -2.7 54,162 - -4.5 54,166 + -3.9 54,168 + -4.6 54,277 + -5.4 54,319 + -3.5 54,320 - -3.4 54,424 - proB BNILDI_00245 0.18 -5.0 54,424 - proB BNILDI_00245 0.18 -1.2 54,424 - proB BNILDI_00245 0.18 -2.0 54,484 + proB BNILDI_00245 0.24 -4.4 54,759 + proB BNILDI_00245 0.49 -2.1 54,759 + proB BNILDI_00245 0.49 -4.4 54,800 + proB BNILDI_00245 0.53 -3.9 54,800 + proB BNILDI_00245 0.53 -3.5 54,800 + proB BNILDI_00245 0.53 -4.9 54,801 - proB BNILDI_00245 0.53 -1.7 54,801 - proB BNILDI_00245 0.53 -4.4 54,801 - proB BNILDI_00245 0.53 -3.1 54,801 - proB BNILDI_00245 0.53 -2.0 54,891 + proB BNILDI_00245 0.61 -4.9 54,892 - proB BNILDI_00245 0.61 -4.5 55,002 + proB BNILDI_00245 0.71 -0.3 55,186 - proB BNILDI_00245 0.88 -3.1
Or see this region's nucleotide sequence