Strain Fitness in Escherichia coli ECRC62 around BNILDI_19140

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcobB and nagK are separated by 15 nucleotidesnagK and lolE are separated by 28 nucleotideslolE and lolD are separated by 5 nucleotideslolD and lolC overlap by 8 nucleotides BNILDI_19130: cobB - NAD-dependent protein deacylase, at 3,845,148 to 3,845,969 cobB BNILDI_19135: nagK - N-acetylglucosamine kinase, at 3,845,985 to 3,846,896 nagK BNILDI_19140: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 3,846,925 to 3,848,163 lolE BNILDI_19145: lolD - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 3,848,169 to 3,848,870 lolD BNILDI_19150: lolC - lipoprotein-releasing ABC transporter permease subunit LolC, at 3,848,863 to 3,850,062 lolC Position (kb) 3846 3847 3848 3849Strain fitness (log2 ratio) -3 -2 -1 0 1at 3845.969 kb on + strandat 3845.970 kb on - strandat 3845.970 kb on - strandat 3845.994 kb on + strandat 3846.000 kb on + strandat 3846.001 kb on - strandat 3846.001 kb on - strandat 3846.001 kb on - strandat 3846.075 kb on + strandat 3846.179 kb on + strand, within nagKat 3846.202 kb on - strand, within nagKat 3846.295 kb on + strand, within nagKat 3846.295 kb on + strand, within nagKat 3846.296 kb on - strand, within nagKat 3846.305 kb on - strand, within nagKat 3846.334 kb on + strand, within nagKat 3846.425 kb on + strand, within nagKat 3846.426 kb on - strand, within nagKat 3846.449 kb on - strand, within nagKat 3846.597 kb on + strand, within nagKat 3846.670 kb on + strand, within nagKat 3846.677 kb on + strand, within nagKat 3846.756 kb on + strand, within nagKat 3846.790 kb on + strand, within nagKat 3846.790 kb on + strand, within nagKat 3846.790 kb on + strand, within nagKat 3846.879 kb on - strandat 3846.892 kb on + strandat 3846.893 kb on - strandat 3846.893 kb on - strandat 3846.917 kb on + strandat 3846.918 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
3,845,969 + +0.3
3,845,970 - +1.2
3,845,970 - +0.8
3,845,994 + +0.1
3,846,000 + -0.3
3,846,001 - -0.1
3,846,001 - +0.7
3,846,001 - +1.4
3,846,075 + -0.2
3,846,179 + nagK BNILDI_19135 0.21 -0.7
3,846,202 - nagK BNILDI_19135 0.24 +0.6
3,846,295 + nagK BNILDI_19135 0.34 -2.0
3,846,295 + nagK BNILDI_19135 0.34 +0.1
3,846,296 - nagK BNILDI_19135 0.34 +0.3
3,846,305 - nagK BNILDI_19135 0.35 +1.1
3,846,334 + nagK BNILDI_19135 0.38 -1.9
3,846,425 + nagK BNILDI_19135 0.48 +0.0
3,846,426 - nagK BNILDI_19135 0.48 -0.1
3,846,449 - nagK BNILDI_19135 0.51 -0.5
3,846,597 + nagK BNILDI_19135 0.67 +1.1
3,846,670 + nagK BNILDI_19135 0.75 -0.1
3,846,677 + nagK BNILDI_19135 0.76 -0.3
3,846,756 + nagK BNILDI_19135 0.85 -0.2
3,846,790 + nagK BNILDI_19135 0.88 -1.8
3,846,790 + nagK BNILDI_19135 0.88 +0.1
3,846,790 + nagK BNILDI_19135 0.88 -0.8
3,846,879 - +0.2
3,846,892 + -0.4
3,846,893 - -2.9
3,846,893 - +0.8
3,846,917 + -1.2
3,846,918 - +0.0

Or see this region's nucleotide sequence