Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ychF and BNILDI_18810 are separated by 244 nucleotides BNILDI_18810 and ycgV are separated by 344 nucleotides
BNILDI_18805: ychF - redox-regulated ATPase YchF, at 3,781,429 to 3,782,520
ychF
BNILDI_18810: BNILDI_18810 - Putative membrane protein, at 3,782,765 to 3,782,944
_18810
BNILDI_18815: ycgV - Uncharacterized protein YcgV, at 3,783,289 to 3,786,156
ycgV
Position (kb)
3782
3783 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3782.038 kb on + strand, within ychF at 3782.039 kb on - strand, within ychF at 3782.272 kb on + strand, within ychF at 3782.528 kb on - strand at 3782.727 kb on - strand at 3782.728 kb on + strand at 3782.729 kb on - strand at 3782.729 kb on - strand at 3782.900 kb on - strand, within BNILDI_18810 at 3782.900 kb on - strand, within BNILDI_18810 at 3782.965 kb on - strand at 3783.124 kb on - strand at 3783.255 kb on + strand at 3783.276 kb on - strand at 3783.279 kb on + strand at 3783.422 kb on + strand at 3783.457 kb on - strand at 3783.459 kb on + strand at 3783.665 kb on + strand, within ycgV at 3783.665 kb on + strand, within ycgV at 3783.665 kb on + strand, within ycgV at 3783.666 kb on - strand, within ycgV at 3783.704 kb on + strand, within ycgV at 3783.704 kb on + strand, within ycgV at 3783.717 kb on + strand, within ycgV at 3783.751 kb on - strand, within ycgV at 3783.751 kb on - strand, within ycgV at 3783.783 kb on + strand, within ycgV at 3783.831 kb on + strand, within ycgV at 3783.834 kb on - strand, within ycgV at 3783.834 kb on - strand, within ycgV at 3783.834 kb on - strand, within ycgV at 3783.906 kb on + strand, within ycgV at 3783.907 kb on - strand, within ycgV at 3783.907 kb on - strand, within ycgV at 3783.907 kb on - strand, within ycgV at 3783.916 kb on + strand, within ycgV at 3783.917 kb on - strand, within ycgV at 3783.917 kb on - strand, within ycgV
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,782,038 + ychF BNILDI_18805 0.56 +0.8 3,782,039 - ychF BNILDI_18805 0.56 -1.0 3,782,272 + ychF BNILDI_18805 0.77 -0.8 3,782,528 - +1.7 3,782,727 - -1.3 3,782,728 + -0.3 3,782,729 - +2.2 3,782,729 - +0.0 3,782,900 - BNILDI_18810 0.75 -2.3 3,782,900 - BNILDI_18810 0.75 +0.3 3,782,965 - +0.3 3,783,124 - -0.5 3,783,255 + +0.6 3,783,276 - +0.9 3,783,279 + -0.1 3,783,422 + +0.8 3,783,457 - -1.7 3,783,459 + -1.4 3,783,665 + ycgV BNILDI_18815 0.13 -2.1 3,783,665 + ycgV BNILDI_18815 0.13 -0.1 3,783,665 + ycgV BNILDI_18815 0.13 +0.5 3,783,666 - ycgV BNILDI_18815 0.13 +1.5 3,783,704 + ycgV BNILDI_18815 0.14 +0.1 3,783,704 + ycgV BNILDI_18815 0.14 +0.5 3,783,717 + ycgV BNILDI_18815 0.15 +0.2 3,783,751 - ycgV BNILDI_18815 0.16 -1.7 3,783,751 - ycgV BNILDI_18815 0.16 +0.3 3,783,783 + ycgV BNILDI_18815 0.17 -0.0 3,783,831 + ycgV BNILDI_18815 0.19 +0.5 3,783,834 - ycgV BNILDI_18815 0.19 -0.6 3,783,834 - ycgV BNILDI_18815 0.19 -0.1 3,783,834 - ycgV BNILDI_18815 0.19 -1.3 3,783,906 + ycgV BNILDI_18815 0.22 -2.0 3,783,907 - ycgV BNILDI_18815 0.22 -0.8 3,783,907 - ycgV BNILDI_18815 0.22 +0.9 3,783,907 - ycgV BNILDI_18815 0.22 -1.2 3,783,916 + ycgV BNILDI_18815 0.22 +0.2 3,783,917 - ycgV BNILDI_18815 0.22 +0.7 3,783,917 - ycgV BNILDI_18815 0.22 +0.4
Or see this region's nucleotide sequence