Strain Fitness in Escherichia coli ECRC62 around BNILDI_18495

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyciG and yciE are separated by 85 nucleotidesyciE and yciE are separated by 45 nucleotidesyciE and ompW are separated by 59 nucleotides BNILDI_18485: yciG - Uncharacterized protein YciG, at 3,724,759 to 3,724,938 yciG BNILDI_18490: yciE - Protein YciF, at 3,725,024 to 3,725,524 yciE BNILDI_18495: yciE - Protein YciE, at 3,725,570 to 3,726,076 yciE BNILDI_18500: ompW - outer membrane protein OmpW, at 3,726,136 to 3,726,774 ompW Position (kb) 3725 3726 3727Strain fitness (log2 ratio) -1 0 1at 3725.194 kb on + strand, within yciEat 3725.266 kb on + strand, within yciEat 3725.403 kb on + strand, within yciEat 3725.404 kb on - strand, within yciEat 3726.085 kb on - strandat 3726.162 kb on + strandat 3726.162 kb on + strandat 3726.185 kb on - strandat 3726.245 kb on + strand, within ompWat 3726.246 kb on - strand, within ompWat 3726.287 kb on + strand, within ompWat 3726.287 kb on + strand, within ompWat 3726.395 kb on + strand, within ompWat 3726.396 kb on - strand, within ompWat 3726.400 kb on - strand, within ompWat 3726.577 kb on - strand, within ompWat 3726.579 kb on - strand, within ompWat 3726.579 kb on - strand, within ompWat 3726.583 kb on - strand, within ompWat 3726.643 kb on - strand, within ompWat 3726.667 kb on + strand, within ompWat 3726.795 kb on + strandat 3726.818 kb on + strandat 3726.845 kb on + strandat 3726.845 kb on + strandat 3726.856 kb on - strandat 3727.034 kb on + strandat 3727.034 kb on + strandat 3727.047 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,725,194 + yciE BNILDI_18490 0.34 -0.6
3,725,266 + yciE BNILDI_18490 0.48 +0.0
3,725,403 + yciE BNILDI_18490 0.76 -0.8
3,725,404 - yciE BNILDI_18490 0.76 +0.3
3,726,085 - -0.7
3,726,162 + +0.5
3,726,162 + -1.1
3,726,185 - +0.7
3,726,245 + ompW BNILDI_18500 0.17 -1.1
3,726,246 - ompW BNILDI_18500 0.17 -1.7
3,726,287 + ompW BNILDI_18500 0.24 +0.1
3,726,287 + ompW BNILDI_18500 0.24 -0.7
3,726,395 + ompW BNILDI_18500 0.41 +0.3
3,726,396 - ompW BNILDI_18500 0.41 +1.7
3,726,400 - ompW BNILDI_18500 0.41 +0.7
3,726,577 - ompW BNILDI_18500 0.69 +0.3
3,726,579 - ompW BNILDI_18500 0.69 +0.2
3,726,579 - ompW BNILDI_18500 0.69 +0.1
3,726,583 - ompW BNILDI_18500 0.70 -1.3
3,726,643 - ompW BNILDI_18500 0.79 -0.9
3,726,667 + ompW BNILDI_18500 0.83 -0.2
3,726,795 + +0.2
3,726,818 + -0.2
3,726,845 + -1.2
3,726,845 + +1.2
3,726,856 - +0.0
3,727,034 + +1.2
3,727,034 + -0.2
3,727,047 - -0.1

Or see this region's nucleotide sequence