Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhV and ydhW are separated by 12 nucleotides ydhW and BNILDI_16625 are separated by 63 nucleotides BNILDI_16625 and ydhU overlap by 4 nucleotides ydhU and ydhT are separated by 51 nucleotides
BNILDI_16615: ydhV - aldehyde ferredoxin oxidoreductase, at 3,327,700 to 3,329,802
ydhV
BNILDI_16620: ydhW - YdhW family putative oxidoreductase system protein, at 3,329,815 to 3,330,453
ydhW
BNILDI_16625: BNILDI_16625 - Ferredoxin, at 3,330,517 to 3,331,185
_16625
BNILDI_16630: ydhU - Putative cytochrome YdhU, at 3,331,182 to 3,331,967
ydhU
BNILDI_16635: ydhT - protein YdhT, at 3,332,019 to 3,332,783
ydhT
Position (kb) 3330
3331
3332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3329.547 kb on + strand, within ydhV at 3329.661 kb on + strand at 3329.662 kb on - strand at 3329.662 kb on - strand at 3329.686 kb on + strand at 3329.789 kb on + strand at 3330.070 kb on + strand, within ydhW at 3330.070 kb on + strand, within ydhW at 3330.071 kb on - strand, within ydhW at 3330.088 kb on - strand, within ydhW at 3330.110 kb on - strand, within ydhW at 3330.110 kb on - strand, within ydhW at 3330.113 kb on - strand, within ydhW at 3330.113 kb on - strand, within ydhW at 3330.116 kb on - strand, within ydhW at 3330.223 kb on + strand, within ydhW at 3330.235 kb on + strand, within ydhW at 3330.235 kb on + strand, within ydhW at 3330.268 kb on + strand, within ydhW at 3330.367 kb on + strand, within ydhW at 3330.367 kb on + strand, within ydhW at 3330.394 kb on + strand at 3330.667 kb on - strand, within BNILDI_16625 at 3330.824 kb on + strand, within BNILDI_16625 at 3330.934 kb on + strand, within BNILDI_16625 at 3330.935 kb on - strand, within BNILDI_16625 at 3330.963 kb on + strand, within BNILDI_16625 at 3331.095 kb on + strand, within BNILDI_16625 at 3331.167 kb on + strand at 3331.230 kb on + strand at 3331.230 kb on + strand at 3331.231 kb on - strand at 3331.231 kb on - strand at 3331.231 kb on - strand at 3331.231 kb on - strand at 3331.231 kb on - strand at 3331.286 kb on - strand, within ydhU at 3331.286 kb on - strand, within ydhU at 3331.386 kb on + strand, within ydhU at 3331.436 kb on - strand, within ydhU at 3331.661 kb on + strand, within ydhU at 3331.661 kb on + strand, within ydhU at 3331.732 kb on - strand, within ydhU at 3331.765 kb on + strand, within ydhU at 3331.765 kb on + strand, within ydhU at 3331.826 kb on - strand, within ydhU at 3331.866 kb on - strand, within ydhU at 3331.867 kb on + strand, within ydhU at 3331.867 kb on + strand, within ydhU at 3331.868 kb on - strand, within ydhU at 3331.896 kb on + strand at 3331.935 kb on - strand at 3332.099 kb on + strand, within ydhT at 3332.127 kb on + strand, within ydhT
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,329,547 + ydhV BNILDI_16615 0.88 -0.3 3,329,661 + +0.3 3,329,662 - +2.0 3,329,662 - -2.0 3,329,686 + -1.2 3,329,789 + -0.2 3,330,070 + ydhW BNILDI_16620 0.40 +2.3 3,330,070 + ydhW BNILDI_16620 0.40 -1.1 3,330,071 - ydhW BNILDI_16620 0.40 +0.5 3,330,088 - ydhW BNILDI_16620 0.43 +1.8 3,330,110 - ydhW BNILDI_16620 0.46 +1.7 3,330,110 - ydhW BNILDI_16620 0.46 +0.5 3,330,113 - ydhW BNILDI_16620 0.47 +1.0 3,330,113 - ydhW BNILDI_16620 0.47 -2.4 3,330,116 - ydhW BNILDI_16620 0.47 -1.0 3,330,223 + ydhW BNILDI_16620 0.64 -0.4 3,330,235 + ydhW BNILDI_16620 0.66 -0.0 3,330,235 + ydhW BNILDI_16620 0.66 -0.1 3,330,268 + ydhW BNILDI_16620 0.71 -0.1 3,330,367 + ydhW BNILDI_16620 0.86 -0.3 3,330,367 + ydhW BNILDI_16620 0.86 -1.1 3,330,394 + -2.9 3,330,667 - BNILDI_16625 0.22 +0.2 3,330,824 + BNILDI_16625 0.46 -0.2 3,330,934 + BNILDI_16625 0.62 +0.2 3,330,935 - BNILDI_16625 0.62 -1.1 3,330,963 + BNILDI_16625 0.67 -0.3 3,331,095 + BNILDI_16625 0.86 +0.9 3,331,167 + +0.2 3,331,230 + -0.6 3,331,230 + -0.6 3,331,231 - -0.0 3,331,231 - -0.1 3,331,231 - -0.2 3,331,231 - +1.2 3,331,231 - +0.2 3,331,286 - ydhU BNILDI_16630 0.13 -1.1 3,331,286 - ydhU BNILDI_16630 0.13 +0.7 3,331,386 + ydhU BNILDI_16630 0.26 -0.5 3,331,436 - ydhU BNILDI_16630 0.32 +0.7 3,331,661 + ydhU BNILDI_16630 0.61 +0.0 3,331,661 + ydhU BNILDI_16630 0.61 -0.5 3,331,732 - ydhU BNILDI_16630 0.70 +2.8 3,331,765 + ydhU BNILDI_16630 0.74 +0.1 3,331,765 + ydhU BNILDI_16630 0.74 -0.4 3,331,826 - ydhU BNILDI_16630 0.82 -0.8 3,331,866 - ydhU BNILDI_16630 0.87 +0.5 3,331,867 + ydhU BNILDI_16630 0.87 -0.7 3,331,867 + ydhU BNILDI_16630 0.87 +0.4 3,331,868 - ydhU BNILDI_16630 0.87 +1.8 3,331,896 + +0.6 3,331,935 - +0.3 3,332,099 + ydhT BNILDI_16635 0.10 -1.1 3,332,127 + ydhT BNILDI_16635 0.14 +1.3
Or see this region's nucleotide sequence